BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG07FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 1384 0.0
>3x_Contig1762
Length = 22098
Score = 1384 bits (698), Expect = 0.0
Identities = 749/760 (98%), Gaps = 5/760 (0%)
Strand = Plus / Plus
Query: 86 tatctattgctcaaccttacccaaaggttgccccattttgactttgtcgccaacgttgat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11526 tatctattgctcaaccttacccaaaggttgccccattttgactttgtcgccaacgttgat 11585
Query: 146 tttgaagttaaactctcttggtgcttcaaagcataaaaccactgttgatcctaacatgaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11586 tttgaagttaaactctcttggtgcttcaaagcataaaaccactgttgatcctaacatgaa 11645
Query: 206 accacccatttcttcaccctttatcaaaggcacgccacctaatactttgctagcattttc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11646 accacccatttcttcaccctttatcaaaggcacgccacctaatactttgctagcattttc 11705
Query: 266 atatgttgcttcataacaagtatgcggtttacaatgtctctgagttttttcatttgtaat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11706 atatgttgcttcataacaagtatgcggtttacaatgtctctgagttttttcatttgtaat 11765
Query: 326 tagttctttatcaaagttcaatttgatcgatccgacatttgtagctccgactggggtcat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11766 tagttctttatcaaagttcaatttgatcgatccgacatttgtagctccgactggggtcat 11825
Query: 386 actaaagaatccatgcttccagtgacctaacaatgcaacacgttcattgagaacaaacaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11826 actaaagaatccatgcttccagtgacctaacaatgcaacacgttcattgagaacaaacaa 11885
Query: 446 gtttgggaaatttctctggaaataaggtgccaccgagaagagctcacctgggaaatgacg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11886 gtttgggaaatttctctggaaataaggtgccaccgagaagagctcacctgggaaatgacg 11945
Query: 506 acgaagtttgcaaacccaatttactggagaatggtagtgatgataatcaccaggagccaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11946 acgaagtttgcaaacccaatttactggagaatggtagtgatgataatcaccaggagccaa 12005
Query: 566 ataaatgaccgcaaaatatagctgggtatcggtagaagataatttttgtttgacatagtt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12006 ataaatgaccgcaaaatatagctgggtatcggtagaagataatttttgtttgacatagtt 12065
Query: 626 gggggatagctcacccaatanggtaaaagtcttggaagaatcttgatctgagatggcttt 685
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 12066 gggggatagctcacccaatagggtaaaagtcttggaagaatcttgatctgagatggc-tt 12124
Query: 686 ggttcttttccattttataatcgaaaggttgtaaatggtcttcactttgagaacctgngg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 12125 ggttcttttccattttataatcgaaaggttgtaaatggtcttcactttgagaacctgggg 12184
Query: 746 tatgaccaatgatatcgttcaaactgtatggggatttcattggattcttgcaaattcttc 805
||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||
Sbjct: 12185 tatgaccaatgatatcgttcaaactgtat-gggatatcatt-gattcttgcaaattc-tc 12241
Query: 806 tgggatcattatcagtcctaagtatcctgccccaatttct 845
|| ||||||||||||| || |||||||||||||| |||||
Sbjct: 12242 tgtgatcattatcagt-cttagtatcctgccccagtttct 12280
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6642
Number of Sequences: 1807
Number of extensions: 6642
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)