BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG08RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1664 1540 0.0
>3x_Contig1664
Length = 15696
Score = 1540 bits (777), Expect = 0.0
Identities = 812/820 (99%), Gaps = 3/820 (0%)
Strand = Plus / Minus
Query: 50 atccttcaattccttgtgtctagcgaacaattcagcttcagatttctgtaacttcttttc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8235 atccttcaattccttgtgtctagcgaacaattcagcttcagatttctgtaacttcttttc 8176
Query: 110 cttttcttcaactttctgttggaatactgccttcatttcagcttccaatttagctagttt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8175 cttttcttcaactttctgttggaatactgccttcatttcagcttccaatttagctagttt 8116
Query: 170 gacttcgtgtagttgtttttcctccttttgtctagtttctggatcgaaattcttgaagac 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8115 gacttcgtgtagttgtttttcctccttttgtctagtttctggatcgaaattcttgaagac 8056
Query: 230 actgttgtcttgtttgatacccaatcctaatagcttttcagatctatatttttcgtataa 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8055 actgttgtcttgtttgatacccaatcctaatagcttttcagatctatatttttcgtataa 7996
Query: 290 tactttgttagtcctttcgcgtaattcttccaagtattgtctaattaatagatctcttaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7995 tactttgttagtcctttcgcgtaattcttccaagtattgtctaattaatagatctcttaa 7936
Query: 350 atatacaaaatcagaatgttttgtgttgtcaacttcgatgacaccccatgggtaagccct 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7935 atatacaaaatcagaatgttttgtgttgtcaacttcgatgacaccccatgggtaagccct 7876
Query: 410 acctctaacttttctaccgtcttctgtagtgacttgttcagtggaaccgacaatggcaaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7875 acctctaacttttctaccgtcttctgtagtgacttgttcagtggaaccgacaatggcaaa 7816
Query: 470 aggaatcttttcaaagatgttttcagttgaagtttcatctcccagcatagaatattgagg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7815 aggaatcttttcaaagatgttttcagttgaagtttcatctcccagcatagaatattgagg 7756
Query: 530 tggttcaaacaactgcacgttggcttgttctagttgtttcttgatggtggctntgaaagt 589
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7755 tggttcaaacaactgcacgttggcttgttctagttgtttcttgatggtggctttgaaagt 7696
Query: 590 gacaatttcttcgtcagttaagatgtcagatttggcgataacggggatcaagttacattt 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7695 gacaatttcttcgtcagttaagatgtcagatttggcgataacggggatcaagttacattt 7636
Query: 650 ggaatgaacctgcttgcagaattccaaatccaacggcttcaaaccatgaccagtaggttc 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7635 ggaatgaacctgcttgcagaattccaaatccaacggcttcaaaccatgaccagtaggttc 7576
Query: 710 gataaagtagagacaagcatgaatcctgttatcttgcaaagtagttcttttgatcttgtt 769
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7575 gataaagtagagacaagcatgaatcctgttatcttgcaaagtagttctttgaatcttgtt 7516
Query: 770 ttcagactcgagattttggtcgaatctacgatttatttcatccacaattggctttcatga 829
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 7515 ttcagactcgagatattggtcgaatctacgatttatttcatccacaattggcttccatga 7456
Query: 830 attctgtgttatc-atagaatcacccaaatcctggtgcat 868
| ||||||||||| ||||||||| ||||||||||||||||
Sbjct: 7455 a-tctgtgttatcaatagaatca-ccaaatcctggtgcat 7418
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8212
Number of Sequences: 1807
Number of extensions: 8212
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)