BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG09FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig858 1661 0.0
>3x_Contig858
Length = 3029
Score = 1661 bits (838), Expect = 0.0
Identities = 854/858 (99%), Gaps = 1/858 (0%)
Strand = Plus / Minus
Query: 85 atcaaaaggataaaccctccgatgaactacttgaaagttaatgtaaatgcagtcattccc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 atcaaaaggataaaccctccgatgaactacttgaaagttaatgtaaatgcagtcattccc 1205
Query: 145 tcttattctcatacccgaagctactgtcttggtttttcaatgaacttcatatgaagttga 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 tcttattctcatacccgaagctactgtcttggtttttcaatgaacttcatatgaagttga 1145
Query: 205 gtatatagataaccataaaatcttttagaattaacaactatagctgctaaagttgtccac 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 gtatatagataaccataaaatcttttagaattaacaactatagctgctaaagttgtccac 1085
Query: 265 aattactactgtaatattatcattgtcatgtgtaaaactcaacttgtttgtgatttacaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 aattactactgtaatattatcattgtcatgtgtaaaactcaacttgtttgtgatttacaa 1025
Query: 325 taaaaatctcgttagtttgaaagggtgacatttactcatttcataattaactaactcgga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 taaaaatctcgttagtttgaaagggtgacatttactcatttcataattaactaactcgga 965
Query: 385 agagagagctttcgagaaatagagctaaatctttgaagcatgtaataaactgccatattc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 agagagagctttcgagaaatagagctaaatctttgaagcatgtaataaactgccatattc 905
Query: 445 ggtttaatcagccaaatcctgtaccaactgtatattccccccatcaaaaaaagagagatt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ggtttaatcagccaaatcctgtaccaactgtatattccccccatcaaaaaaagagagatt 845
Query: 505 ctggcgaatgtttatttgagttctttctttttagcatattatgaaaattttctgaacttg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ctggcgaatgtttatttgagttctttctttttagcatattatgaaaattttctgaacttg 785
Query: 565 aaaaagaagcgatgagatgagatgagcttatacagtagtaactgcactatgggtagcatt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aaaaagaagcgatgagatgagatgagcttatacagtagtaactgcactatgggtagcatt 725
Query: 625 aaataacaacatatacattcttattctctctcgtaggacaatacagcactacagatatgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aaataacaacatatacattcttattctctctcgtaggacaatacagcactacagatatgg 665
Query: 685 cagccacgtcgaataagttgaacaagcgtcaattggaatctaaggagtcgaaagattctg 744
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 664 cagccacgtcgaaaaagttgaacaagcgtcaattggaatctaaggagtcgaaggattctg 605
Query: 745 gtaaaattgtaaaaagagctaaaaacattagtgttgattctggcgatgaagattctgatg 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gtaaaattgtaaaaagagctaaaaacattagtgttgattctggcgatgaagattctgatg 545
Query: 805 atgtcctccacggtttatcttcagaagatgagctagatgatgaattagatgatgctagct 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atgtcctccacggtttatcttcagaagatgagctagatgatgaattagatgatgctagct 485
Query: 865 caaattcagattcagacgagctagac-acgaatctgatcaactggatgaatctgttgagg 923
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 484 caaattcagattcagacgagctagacaacgaatctgatcaactggatgaatctgatgagg 425
Query: 924 atcaagaagatgctgaag 941
||||||||||||||||||
Sbjct: 424 atcaagaagatgctgaag 407
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8575
Number of Sequences: 1807
Number of extensions: 8575
Number of successful extensions: 321
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)