BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC31ZG10FM1.SCF screened BAC_end
         (907 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1793                                                        1267   0.0  

>3x_Contig1793 
          Length = 40499

 Score = 1267 bits (639), Expect = 0.0
 Identities = 700/718 (97%), Gaps = 2/718 (0%)
 Strand = Plus / Plus

                                                                         
Query: 86    tttgaagtgacggtttggtggaggaacaaaacgacaaaactctatttaagccatcctgta 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12534 tttgaagtgacggtttggtggaggaacaaaacgacaaaactctatttaagccatcctgta 12593

                                                                         
Query: 146   attttgttgtcgtcgttaactcttgcaaatgtttaacatcataattgatatctagctgtc 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12594 attttgttgtcgtcgttaactcttgcaaatgtttaacatcataattgatatctagctgtc 12653

                                                                         
Query: 206   tttccaacaacttagaattccatccacccaaaatgattgttaaactttcacctgaaacaa 265
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12654 tttccaacaacttagaattccatccacccaaaatgattgttaaactttcacctgaaacaa 12713

                                                                         
Query: 266   ataggtaatcaatatgtttggaagaatgaattgtctcataaactcctaaataatcatcga 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12714 ataggtaatcaatatgtttggaagaatgaattgtctcataaactcctaaataatcatcga 12773

                                                                         
Query: 326   attcagtttcattcgagttcatatagagatagccccaagtcattatagctagctcatcat 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12774 attcagtttcattcgagttcatatagagatagccccaagtcattatagctagctcatcat 12833

                                                                         
Query: 386   tgaatagcttgtcttttatggcatcctttattgaaatagttatggacttcctgttaacag 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12834 tgaatagcttgtcttttatggcatcctttattgaaatagttatggacttcctgttaacag 12893

                                                                         
Query: 446   catcaagcgaatccaaagttctatactttaaaagttcacaatatgctttcaaagacaact 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12894 catcaagcgaatccaaagttctatactttaaaagttcacaatatgctttcaaagacaact 12953

                                                                         
Query: 506   ctctacaactaccagataaatattgctntgttatcttctgtaagattcttgaaacaacag 565
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 12954 ctctacaactaccagataaatattgctttgttatcttctgtaagattcttgaaacaacag 13013

                                                                         
Query: 566   ttccaaattcaacagaatgtagtaactgcaatctggggattaaagatgccaaaaggtaca 625
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13014 ttccaaattcaacagaatgtagtaactgcaatctggggattaaagatgccaaaaggtaca 13073

                                                                         
Query: 626   ctaaaaccggtataattgcggatgggattattcgatttctgatcaaagtcagttgccagt 685
             ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 13074 ctaaaaccggtataattgcggat-ggattattcgattcctgatcaaagtcagttgccagt 13132

                                                                         
Query: 686   atttgggacacagattgtgaactttaaccaatttttgcttcaataat-ccgaatggattt 744
             |||||||||||||| ||||||||| | |||||| ||||| ||||||| ||||||| ||||
Sbjct: 13133 atttgggacacagaatgtgaacttaacccaattcttgctccaataatcccgaatgaattt 13192

                                                                       
Query: 745   acgagagagttcgttttgatgtcagccggactttggttataattgattccttttaaag 802
             |||||||||| ||| | |||||||| ||||||||| |||  |||||||| ||||||||
Sbjct: 13193 acgagagagtccgtatagatgtcaggcggactttgtttagtattgattcgttttaaag 13250


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6415
Number of Sequences: 1807
Number of extensions: 6415
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)