BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG10RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1670 1473 0.0
>3x_Contig1670
Length = 9382
Score = 1473 bits (743), Expect = 0.0
Identities = 840/861 (97%), Gaps = 9/861 (1%)
Strand = Plus / Minus
Query: 50 acaaatcattacgtggcaaagtccgaagattcctatattagtgggctcctatcaacaagc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6317 acaaatcattacgtggcaaagtccgaagattcctatattagtgggctcctatcaacaagc 6258
Query: 110 gttctcctacctggtgccgatatttgttattttgttttatcatttcgacaaactcatttc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6257 gttctcctacctggtgccgatatttgttattttgttttatcatttcgacaaactcatttc 6198
Query: 170 tttgatctctcagagatgctattgaaattaaagaaggaggcagtttgcatcaaccatgat 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6197 tttgatctctcagagatgctattgaaattaaagaaggaggcagtttgcatcaaccatgat 6138
Query: 230 gtagtgattagtttagacgcattggtgcggttgataactagctgctttgtttaaatttca 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6137 gtagtgattagtttagacgcattggtgcggttgataactagctgctttgtttaaatttca 6078
Query: 290 ttgtaagttatttgttgagaaacgtcaaattaaccttgtaattatgccattaatggaatg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6077 ttgtaagttatttgttgagaaacgtcaaattaaccttgtaattatgccattaatggaatg 6018
Query: 350 actggaaattcttgataaaaaagaacaggtgcatatatcatgtttaacactgtgaaattt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6017 actggaaattcttgataaaaaagaacaggtgcatatatcatgtttaacactgtgaaattt 5958
Query: 410 agctcgctacatttccggtaaattagaaacaatatagataaactattaattttgtgacca 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5957 agctcgctacatttccggtaaattagaaacaatatagataaactattaattttgtgacca 5898
Query: 470 tatcagtactctaattacttgatgattagcttttatgagcgtttcctttattgaaatacg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5897 tatcagtactctaattacttgatgattagcttttatgagcgtttcctttattgaaatacg 5838
Query: 530 cgatatagagtttcagttcatgatttaattagatttcgaaaaggagaccaaactttcttt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5837 cgatatagagtttcagttcatgatttaattagatttcgaaaaggagaccaaactttcttt 5778
Query: 590 gaaaagtcgtattaagcaaggatcatgaaatcactattggctgcctacttaagacagggg 649
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5777 gaaaagtcgtattaagcaaggatcatgaaatcactattggctgcctacttaagacaaggg 5718
Query: 650 acttgatttcagaccatgcantattttttgccgattagattatttttcgatgat-atatt 708
|||||||||||||||||||| ||||||||||||| |||||| ||||||||||| |||||
Sbjct: 5717 acttgatttcagaccatgcataattttttgccgataagatta-ttttcgatgataatatt 5659
Query: 709 agatactagcanaagtagaagattagcacagcttagaaagtttttttttagattttatgt 768
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5658 agatactagcaaaagtagaagattagcacagctaagaaagtttttttttagattttatgt 5599
Query: 769 atttcatgtaccctagatatttctattaagtagaacatttgagttcacattattaaaaaa 828
| |||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 5598 a-ttcatgta-cctagatatttctataaagtagaacatttgagttcacatta-taaaaaa 5542
Query: 829 acattaacccatcgaatggcatgtctcttagaaaaaaggtttactagttaaaaagtcaac 888
||||||| |||||||||||||||||||| || | | |||| |||||| ||||||||||||
Sbjct: 5541 acattaa-ccatcgaatggcatgtctctaag-agagaggtatactag-taaaaagtcaac 5485
Query: 889 tttgggggagaaatcaatgat 909
||| ||||||||| |||||||
Sbjct: 5484 ttt-ggggagaaaccaatgat 5465
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7569
Number of Sequences: 1807
Number of extensions: 7569
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)