BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG11FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1283 1292 0.0
>3x_Contig1283
Length = 6261
Score = 1292 bits (652), Expect = 0.0
Identities = 780/818 (95%), Gaps = 4/818 (0%)
Strand = Plus / Plus
Query: 85 ccggttactcttacactgacgctaacatcaagaagaacgtcttgtgggatgaacaaacta 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4279 ccggttactcttacactgacgctaacatcaagaagaacgtcttgtgggatgaacaaacta 4338
Query: 145 tgtctgactacttggaaaacccaaagaagtacattccaggtaccaagatggctttcggtg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4339 tgtctgactacttggaaaacccaaagaagtacattccaggtaccaagatggctttcggtg 4398
Query: 205 gtttgaagaatgaaaaggacagaaacgatatcgttacttacatgttgaaggcttgtaaat 264
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4399 gtttgaagaaggaaaaggacagaaacgatatcgttacttacatgttgaaggcttgtaaat 4458
Query: 265 aaacatttatgagttaaatgaactttcccaatttgttttgtttcctataaatgtcttcct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4459 aaacatttatgagttaaatgaactttcccaatttgttttgtttcctataaatgtcttcct 4518
Query: 325 ttaacctccatgcttctctcatttgaaaagaaaaaattcattcatgcacgcatggtagat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4519 ttaacctccatgcttctctcatttgaaaagaaaaaattcattcatgcacgcatggtagat 4578
Query: 385 tgatattatgtatatacaccatctcacccttcccggaacgcttttattttgcaccttcac 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4579 tgatattatgtatatacaccatctcacccttcccggaacgcttttattttgcaccttcac 4638
Query: 445 cttttctctctgcatagagaaaattccttaatgtttttttctacagtttgaaaactgtct 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4639 cttttctctctgcatagagaaaattccttaatgtttttttctacagtttgaaaactgtct 4698
Query: 505 atgaacgttcttctaagtttgctgctgcttataaaaaaagaggattttggaattttaaca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4699 atgaacgttcttctaagtttgctgctgcttataaaaaaagaggattttggaattttaaca 4758
Query: 565 agagattacggatttttatctctgaaacaacgcttgtatattttttcgtttcgttggtct 624
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 4759 agagattacggatttttatctctgaaacaacgcttgtata-tttttcgtttcgttgttct 4817
Query: 625 ttatcatgtgatcttcttttcatccttatactcgtncattctgttgngtttttttggccg 684
||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||
Sbjct: 4818 ttatcatgtgatcttcttttcatccttatactcgtccattctgttgtgttttttt-gccg 4876
Query: 685 taatacttggtaatattatattccgttattgactggtaaaaagactttcaaatcagaagg 744
| ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4877 ttatacttgtaattattata-tccgttattgactggtaaaaagactttcaaatcagaagg 4935
Query: 745 atcagcctttggtttaccggcaaacaattaagaacgaacctttttctgattgaacccaaa 804
|||||| |||| | ||||| ||||||| ||||||||||||||| |||| ||||| |||
Sbjct: 4936 atcagcatttgatataccgcaaaacaataaagaacgaaccttttcatgatagaaccaaaa 4995
Query: 805 cttcagtttatc-acttgggccaagattccaatggaaaaaaaatggaggtgattcaacaa 863
|| || ||||| ||||| |||||||| | |||| | |||||||| |||||| |||||||
Sbjct: 4996 ctccaagttatcaacttgagccaagatacaaatgaagaaaaaatgaaggtgaatcaacaa 5055
Query: 864 aaagtcgttacatttacaacttttggaaacctggtact 901
||||||||||| | |||||| |||||| |||| ||||
Sbjct: 5056 aaagtcgttactatcacaactcttggaatcctgttact 5093
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9029
Number of Sequences: 1807
Number of extensions: 9029
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)