BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG11RM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1228 938 0.0
3x_Contig1177 242 1e-63
>3x_Contig1228
Length = 5992
Score = 938 bits (473), Expect = 0.0
Identities = 503/513 (98%)
Strand = Plus / Minus
Query: 49 tacttctcgtcgttttgatccaatggagagagttgagatatatactgtaaggggattctt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tacttctcgtcgttttgatccaatggagagagttgagatatatactgtaaggggattctt 454
Query: 109 tgtaaaataattttagtttgcgttaaagataacaaaggagtttccgggtatttctcagcg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgtaaaataattttagtttgcgttaaagataacaaaggagtttccgggtatttctcagcg 394
Query: 169 ccaagtctatacctttccaaagcagcatcgaaaaattcattcattctctcgtacttcttc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccaagtctatacctttccaaagcagcatcgaaaaattcattcattctctcgtacttcttc 334
Query: 229 tcttcgtcatcggtttcttccggaaggaaaactgttagctctgccaaagcctgcgcataa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tcttcgtcatcggtttcttccggaaggaaaactgttagctctgccaaagcctgcgcataa 274
Query: 289 atagagtgaaacaaatcgctcagttttatagtgctatcattgtcctgaagacgcaataat 348
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atagagtgaacaaaatcgctcagttttatagtgctatcattgtcctgaagacgcaataat 214
Query: 349 ctgtcacattcgtgcactacaccatttaacaatagctgattatctttatccttcaggaaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ctgtcacattcgtgcactacaccatttaacaatagctgattatctttatccttcaggaaa 154
Query: 409 gtttcccacaaaccctttagttggactaactcatcatcggcatcctcgttttcatccaat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gtttcccacaaaccctttagttggactaactcatcatcggcatcctcgttttcatccaat 94
Query: 469 gcaatttcaatctggtttgctgcagatggtgctggtaccgttccctcagaagattgctct 528
| |||| |||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 93 gaaattcaaatctggtttcctgaagatggtgctggtaccgttccctcaaaagattgctct 34
Query: 529 tctggcacagcaactttttgcttcttttgtttc 561
|||||||||| | ||||||||||||||||||||
Sbjct: 33 tctggcacagaacctttttgcttcttttgtttc 1
>3x_Contig1177
Length = 4667
Score = 242 bits (122), Expect = 1e-63
Identities = 173/185 (93%), Gaps = 4/185 (2%)
Strand = Plus / Plus
Query: 717 ataactgcatgtatctctaatctcatctcgtaaaatgtgtcgttaaataaaattgaacca 776
|||||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||
Sbjct: 4 ataactgcatgtatctctaatctcatctcggaaaaagtggcgtgtaataaaattgaacca 63
Query: 777 tgccacgctcaaatctgatgcttactggcacggnctgtcagctgatt-catactgtattc 835
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 64 tgccacgctcaaatctgatgcttactggcacggcctgtcagctgattccatactgtattc 123
Query: 836 gtgaaa-gcgatttgaaaaa-aaaatgtgaatttgagatctgaagtcacg-ggatgtatt 892
|||||| ||||||||||||| ||||||||||| ||||||||||||||||| | |||||||
Sbjct: 124 gtgaaaggcgatttgaaaaagaaaatgtgaatctgagatctgaagtcacgtgtatgtatt 183
Query: 893 tatac 897
|||||
Sbjct: 184 tatac 188
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7315
Number of Sequences: 1807
Number of extensions: 7315
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 2
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)