BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG12FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 821 0.0
>3x_Contig1669
Length = 15503
Score = 821 bits (414), Expect = 0.0
Identities = 541/568 (95%), Gaps = 14/568 (2%)
Strand = Plus / Plus
Query: 91 ctctgtttccagttgctgttgctgtgtttcaatttgagcatttaattcttctacatgaga 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11232 ctctgtttccagttgctgttgctgtgtttcaatttgagcatttaattcttctacatgaga 11291
Query: 151 tttatgtttttcaattgaatcacgaagctcctggatattttcttcaattttacccttttg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11292 tttatgtttttcaattgaatcacgaagctcctggatattttcttcaattttacccttttg 11351
Query: 211 atcctgtaactccgtgtgatggtcttctgcagcagcgaggtcatttttgaatggaaccag 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11352 atcctgtaactccgtgtgatggtcttctgcagcagcgaggtcatttttgaatggaaccag 11411
Query: 271 taactcttcctggtctttcttagcctgttcaagttcattttcattgcttttttgtaagtc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11412 taactcttcctggtctttcttagcctgttcaagttcattttcattgcttttttgtaagtc 11471
Query: 331 ggcacattctgttgtaatcatttcatcctctctctttagctcttcttcattatcctcttt 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11472 ggcacattctgttgtaatcatttcatcctctctctttagctcttcttcattatcctcttt 11531
Query: 391 taatttagcaagttccgccttcttagcttcgagtgcctcttttaatttagcgacctcact 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11532 taatttagcaagttccgccttcttagcttcgagtgcctcttttaatttagcgacctcact 11591
Query: 451 gtcctttctgcgtacaaagattctggaacttttgggccaaagtagccttcaatatcagca 510
|||| |||||||||||||||||||||||||||| ||||||||||| |||| |||||||||
Sbjct: 11592 gtcc-ttctgcgtacaaagattctggaactttttggccaaagtag-cttcgatatcagca 11649
Query: 511 gtttcctttctgatgattttttgaaagcctttaccctgtagcaaagaattctttgttttg 570
|||||| ||||||||| |||| ||||| ||||| |||||||||||||| || ||||||||
Sbjct: 11650 gtttcc-ttctgatga-ttttcgaaag-ctttagcctgtagcaaagaa-tcattgttttg 11705
Query: 571 gctttttcatgttgaatatttgaccccattctttcggattgctgttaggaaatccacgcc 630
|||||| ||||||| |||| ||||||| |||| ||||||||| || |||||||||
Sbjct: 11706 --cttttcagtttgaata-ttga-cccattc-ttcgtattgctgtt-ggtaatccacgc- 11758
Query: 631 tttttttttgggatattaatgtccattg 658
|| ||||| |||||| |||||||||||
Sbjct: 11759 -ttcttttttggatatcaatgtccattg 11785
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,073
Number of Sequences: 1807
Number of extensions: 11073
Number of successful extensions: 160
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)