BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZG12RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1685 1372 0.0
>3x_Contig1685
Length = 14400
Score = 1372 bits (692), Expect = 0.0
Identities = 803/827 (97%), Gaps = 10/827 (1%)
Strand = Plus / Minus
Query: 47 tgccattccagtttaccagtcgatgtttcgacaactcctagttcctttaaatgcgatctt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12018 tgccattccagtttaccagtcgatgtttcgacaactcctagttcctttaaatgcgatctt 11959
Query: 107 t-agatgggtctggcttgaat-tcc-ttgtgtcacacggccatcggcattagtcttggca 163
| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 11958 tcagatgggtctggcttgaatatccattgtgtcacacggccatcggcattagtcttggca 11899
Query: 164 atcgcaaattgggactcactttcaataattgctgtatcattatcagagttaattgtaagg 223
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11898 atcgcaaattgggactcactttcaataattgctgtatcattatcagagttaagtgtaagg 11839
Query: 224 tgagagagcgtacatacgacactttctgcaggtttgcccgatactgtatccaaaatatga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11838 tgagagagcgtacatacgacactttctgcaggtttgcccgatactgtatccaaaatatga 11779
Query: 284 catgtaagtggaactgacatactggaattccgtttggatttggtttgaatggacaaataa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11778 catgtaagtggaactgacatactggaattccgtttggatttggtttgaatggacaaataa 11719
Query: 344 cgtctatcgaacagctaaccgtccctatatctctctaaagagcatcatacacactttgga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11718 cgtctatcgaacagctaaccgtccctatatctctctaaagagcatcatacacactttgga 11659
Query: 404 tacttattttatgtgtctcgctttatcaacattcttttcctgatggtttaaatagttcga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11658 tacttattttatgtgtctcgctttatcaacattcttttcctgatggtttaaatagttcga 11599
Query: 464 aagtcaatttaacaatatgatttttccaggccttcaaacacggacagaaccgaactcatc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11598 aagtcaatttaacaatatgatttttccaggccttcaaacacggacagaaccgaactcatc 11539
Query: 524 gaagataagagaataatagaaattcgtaacactttcagctggacatcgcaagaagttaag 583
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 11538 gaagataagagaataatagaaattcgtaacactttcagctggacatcgcaagaggttaag 11479
Query: 584 tagtgtttgctatatggtgacatggaacatcatgttctcggctatgagacatccaaacac 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11478 tagtgtttgctatatggtgacatggaacatcatgttctcggctatgagacatccaaacac 11419
Query: 644 ggctcacgatatcctgtattcttgactcatttgctgccgacatgcaagtggtatgggtaa 703
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||
Sbjct: 11418 ggctcacgatatcctgtattcttgactcaattgctgccgacaagcaagtggtatggtaaa 11359
Query: 704 gcancatcgttaaacattcggagtatttat-agaccctagagacttcgaggaaatgggat 762
||| ||||||||| ||||||||||||||| ||| |||||||||||||||||||||| ||
Sbjct: 11358 gcaacatcgttaacaattcggagtatttataagaacctagagacttcgaggaaatggaat 11299
Query: 763 actgagtacctta-ttacaacagctccattagagaca-tttcctgtatttaaacca-cca 819
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 11298 actgagtaccttatttacaacagctccattagagacattttcctgtatttaaaccaccca 11239
Query: 820 atttctagtattaa-at-tgtggacttg-gggtggattgaaatggaa 863
||| |||||||||| || |||||||||| || ||||| |||||||||
Sbjct: 11238 attactagtattaagatatgtggacttgtggttggatggaaatggaa 11192
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5353
Number of Sequences: 1807
Number of extensions: 5353
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)