BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH01FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig210 1491 0.0
>3x_Contig210
Length = 1662
Score = 1491 bits (752), Expect = 0.0
Identities = 788/796 (98%), Gaps = 3/796 (0%)
Strand = Plus / Minus
Query: 87 tggctagagtttggagagatgggcaaaagaaagattgttttatctacagattcattagta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 tggctagagtttggagagatgggcaaaagaaagattgttttatctacagattcattagta 1212
Query: 147 ctggtaccattgaagagaagattttccaaagacaatcgatgaagatgagtttgagttcat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 ctggtaccattgaagagaagattttccaaagacaatcgatgaagatgagtttgagttcat 1152
Query: 207 gtgttgtggatgaaaaggaggatgttgaacgattgttcagttcggataatttgaagcaat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 gtgttgtggatgaaaaggaggatgttgaacgattgttcagttcggataatttgaagcaat 1092
Query: 267 tgttcaaacttgatacaaaaaccatatgtgatacccatgagacatataattgtaaacgct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 tgttcaaacttgatacaaaaaccatatgtgatacccatgagacatataattgtaaacgct 1032
Query: 327 gtaagaatggaaagcaaattttgaaagctccggtaatgctatacggtgacgcgacttcgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 gtaagaatggaaagcaaattttgaaagctccggtaatgctatacggtgacgcgacttcgt 972
Query: 387 ggaatcatttgaatcacgatgcattagcaaaaacaaacgaccatctcttgaaaaatgaat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 ggaatcatttgaatcacgatgcattagcaaaaacaaacgaccatctcttgaaaaatgaat 912
Query: 447 tcaatcacaaagacatcagttttgcatttcaatatatatcgcattgatctttcatttttt 506
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 911 tcaatcacaaagacatcagttttgcatgtcaatatatatcgcattgatctttcatttttt 852
Query: 507 taaagtacattttaatttcactactatatagacgcattaataaattcggtttctgggcgg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 taaagtacattttaatttcactactatatagacgcattaataaattcggtttctgggcgg 792
Query: 567 ttcggaacagataactcggttaatatgaagaggcaactcaagttttcgagatctttgagc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ttcggaacagataactcggttaatatgaagaggcaactcaagttttcgagatctttgagc 732
Query: 627 cgatcctaatttatataaatacagtttgaatatggatttccatattaaagctaattttat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cgatcctaatttatataaatacagtttgaatatggatttccatattaaagctaattttat 672
Query: 687 tacgagtatgtttgaatagagttacatgaacatatgtacttaccctagaataaggtagtt 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tacgagtatgtttgaatagagttacatgaacatatgtacttaccctagaataaggtagtt 612
Query: 747 taagaattataagtgtgtcatcaaatcatcaatgtctgcggaattca-cggggaacaggt 805
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 611 taagaattataagtgtgtcatcaaatcatcaatgtctgcg-aattcaacggggaacaggt 553
Query: 806 cgtttaggagaggggttattaccttcactagtgcccctgaacagagattggttatcgaag 865
|| |||||||||||||||||||||||||||||||| ||||||||||| | |||||||| |
Sbjct: 552 cg-ttaggagaggggttattaccttcactagtgccactgaacagagagttgttatcgatg 494
Query: 866 atgttttggttcacca 881
||||||||||||||||
Sbjct: 493 atgttttggttcacca 478
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7849
Number of Sequences: 1807
Number of extensions: 7849
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)