BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC31ZH01RM1.SCF screened BAC_end
         (905 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1486                                                        1411   0.0  

>3x_Contig1486 
          Length = 12131

 Score = 1411 bits (712), Expect = 0.0
 Identities = 725/728 (99%), Gaps = 1/728 (0%)
 Strand = Plus / Plus

                                                                        
Query: 38   agctttacaatttttggagcaatttcaaaagagcatagaagcatggcaaatctgcttcga 97
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2962 agctttacaatttttggagcaatttcaaaagagcatagaagcatggcaaatctgcttcga 3021

                                                                        
Query: 98   agtattaagcaagcatgaagcagacaacttacagttgcaaatgtttgcttgtcaaactct 157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3022 agtattaagcaagcatgaagcagacaacttacagttgcaaatgtttgcttgtcaaactct 3081

                                                                        
Query: 158  agtgaacaaagtcacctatgatctaaaccaggtcaataccgaattagagagtttcaaggg 217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3082 agtgaacaaagtcacctatgatctaaaccaggtcaataccgaattagagagtttcaaggg 3141

                                                                        
Query: 218  aaagctctttgagttcatcgctatgtatgaagagaagatcatagtaacacagttgaacgt 277
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3142 aaagctctttgagttcatcgctatgtatgaagagaagatcatagtaacacagttgaacgt 3201

                                                                        
Query: 278  ggcactagcccgatttaccattcagtatcttgattggaggaatccgctagttgaaattat 337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3202 ggcactagcccgatttaccattcagtatcttgattggaggaatccgctagttgaaattat 3261

                                                                        
Query: 338  taatactctaaatggtcttccgggaaagttactactgtttttgaagattctcccagagga 397
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3262 taatactctaaatggtcttccgggaaagttactactgtttttgaagattctcccagagga 3321

                                                                        
Query: 398  aacattggatatcaaatccactcctctatcccaagatgaatttgagtgtagaacacacga 457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3322 aacattggatatcaaatccactcctctatcccaagatgaatttgagtgtagaacacacga 3381

                                                                        
Query: 458  acttatagataacattggagaagacgtattgaaatttttgatttcatgtttggatagagt 517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3382 acttatagataacattggagaagacgtattgaaatttttgatttcatgtttggatagagt 3441

                                                                        
Query: 518  cggaactgaaggcatatctgcttctaaaatcatttcgtgctttggatcgtggtgttatga 577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3442 cggaactgaaggcatatctgcttctaaaatcatttcgtgctttggatcgtggtgttatga 3501

                                                                        
Query: 578  atttccaatagaacaggtattacaagtgactccattgataaacaccgtgttccaagtctt 637
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3502 atttccaatagaacaggtattacaagtgactccattgataaacaccgtgttccaagtctt 3561

                                                                        
Query: 638  gcatacttcatatgatactgattctgattcttttgaagctgcagtagaatgcttatgtgt 697
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3562 gcatacttcatatgatactgattctgattcttttgaagctgcagtagaatgcttatgtgt 3621

                                                                        
Query: 698  gttattaagagaaacgagagacgcagcccacgatacaatcatacatgcgcttttaccagc 757
            |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct: 3622 gttattaagagaaacgagagacgcagccaacgatacaatcatacatgcgc-tttacgagc 3680

                    
Query: 758  aactttta 765
            ||||||||
Sbjct: 3681 aactttta 3688


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7555
Number of Sequences: 1807
Number of extensions: 7555
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)