BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH02FM1.SCF screened BAC_end
(813 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig342 361 1e-99
3x_Contig265 103 5e-22
>3x_Contig342
Length = 2225
Score = 361 bits (182), Expect = 1e-99
Identities = 255/266 (95%), Gaps = 10/266 (3%)
Strand = Plus / Minus
Query: 84 cttcccatattatcaatccggcaacccaatcgaatggtaaatcttt-cga-tgagtctga 141
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 275 cttcccatattatcaatccggcaacccaatcgaatggtaaatctttgcgaatgagtctga 216
Query: 142 agaagaagctctagaacaattcatcaaagaataccaaaagat-cagaggcctctcgagac 200
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 215 agaagaagctctagaacaattcatcaaagaataccaaaagatgcagaggcctctcgagac 156
Query: 201 gtcaaatttgtgaaagaatttggtccaacgaaagaa-ggaaagat-gacttctggactaa 258
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 155 gtcaaatttgtgaaagaatttggtccaacgaaagaagggaaagatggacttctggactaa 96
Query: 259 tatctgta-gggtgttgccttacag-gacaagatcttcgatttacaaacacgttcgtcgt 316
|||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 95 tatctgtaggggtgttg-cttacagagacaagatcttcgatttacaaacacgttcgtcg- 38
Query: 317 aagtatcacatttttgaacaacgtgg 342
||| |||||||| |||||||||||||
Sbjct: 37 aag-atcacattattgaacaacgtgg 13
>3x_Contig265
Length = 1170
Score = 103 bits (52), Expect = 5e-22
Identities = 139/160 (86%), Gaps = 6/160 (3%)
Strand = Plus / Plus
Query: 377 agatggtgtgcagagaatgaaggtcagtggtcaaacattcgtaagggtttaagtagaatg 436
||||||||||||||||| |||||||||||||||||||| |||||| |||| ||||||||
Sbjct: 14 agatggtgtgcagagaaggaaggtcagtggtcaaacatcggtaaggttttaggtagaatg 73
Query: 437 ccaaaagattg-aaggatcgttgg-gaaaatattgcaagtgggggccaaattaaacccgc 494
||| ||||||| | |||||||||| |||| ||| |||||| || ||||| || | ||||
Sbjct: 74 ccagaagattgtagggatcgttggagaaattatgtcaagtgtggtccaaa-tagagccgc 132
Query: 495 c-attaatggtcctgtggaggaagaa-aaaaattgaaaaa 532
| || |||||| |||||||||||||| |||||||||||||
Sbjct: 133 caataaatggt-ctgtggaggaagaagaaaaattgaaaaa 171
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7962
Number of Sequences: 1807
Number of extensions: 7962
Number of successful extensions: 97
Number of sequences better than 1.0e-20: 2
length of query: 813
length of database: 10,358,551
effective HSP length: 16
effective length of query: 797
effective length of database: 10,329,639
effective search space: 8232722283
effective search space used: 8232722283
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)