BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH02RM1.SCF screened BAC_end
(850 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig927 545 e-155
>3x_Contig927
Length = 3708
Score = 545 bits (275), Expect = e-155
Identities = 317/329 (96%), Gaps = 2/329 (0%)
Strand = Plus / Plus
Query: 51 tgatccaaggtaacacagatatcgctgaattggtatatcaaaacactaagcagtttgata 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3253 tgatccaaggtaacacagatatcgctgaattggtatatcaaaacactaagcagtttgata 3312
Query: 111 aactgtctttcctatatctacttaagggagacaactccaaactggcaaaaatggagtcta 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3313 aactgtctttcctatatctacttaagggagacaactccaaactggcaaaaatggagtcta 3372
Query: 171 ttgctgaacatagatcagatatttccggcttgattcaaaataccttttacaataactcag 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3373 ttgctgaacatagatcagatatttccggcttgattcaaaataccttttacaataactcag 3432
Query: 231 ttcagaagcgtgcaaatgtctttttaaatgcangctctgctccttttgcttatgcagtgg 290
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 3433 ttcagaagcgtgcaaatgtctttttaaatgcaggctctgctcctttggcttatgcagtgg 3492
Query: 291 caaaagctaacggcgacgatgaccnttgcactttcattttgggattccgaggaaattgat 350
|||||||||||||||||||||||| | ||||| |||||| ||| ||||| |||||||||
Sbjct: 3493 caaaagctaacggcgacgatgaccttgccacttccatttt-ggaatccgaagaaattgat 3551
Query: 351 gagcaggactttttccctaccaactgaac 379
||||| ||| ||||||||||||||||||
Sbjct: 3552 gagcaagac-atttccctaccaactgaac 3579
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,971
Number of Sequences: 1807
Number of extensions: 41971
Number of successful extensions: 3237
Number of sequences better than 1.0e-20: 1
length of query: 850
length of database: 10,358,551
effective HSP length: 16
effective length of query: 834
effective length of database: 10,329,639
effective search space: 8614918926
effective search space used: 8614918926
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)