BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH03FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1449 0.0
>3x_Contig1640
Length = 15521
Score = 1449 bits (731), Expect = 0.0
Identities = 808/826 (97%), Gaps = 6/826 (0%)
Strand = Plus / Plus
Query: 87 aacgttgagttgaatctagagaaagtagagagtattatggatactgctgcagaacagata 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5321 aacgttgagttgaatctagagaaagtagagagtattatggatactgctgcagaacagata 5380
Query: 147 gaaattcaaagagagatagacgatgctttatcaaacgcggttgtcggatctacgataaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5381 gaaattcaaagagagatagacgatgctttatcaaacgcggttgtcggatctacgataaat 5440
Query: 207 gatgaagttgatagagaattggaacagttagaccgtgaggttaacggtaccaaggagact 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5441 gatgaagttgatagagaattggaacagttagaccgtgaggttaacggtaccaaggagact 5500
Query: 267 gcacctggtgtgcaagatagactggatcaactcccatcaacaaaggaattgggagaactc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5501 gcacctggtgtgcaagatagactggatcaactcccatcaacaaaggaattgggagaactc 5560
Query: 327 aaggcttcggaaccagaaaaggaaaatggagagtcccaaaaggaaactccaaaagaagaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5561 aaggcttcggaaccagaaaaggaaaatggagagtcccaaaaggaaactccaaaagaagaa 5620
Query: 387 ccactattagcatgaattagaaaggaaatagtatggaaaatagaatgctctaagttcgtc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5621 ccactattagcatgaattagaaaggaaatagtatggaaaatagaatgctctaagttcgtc 5680
Query: 447 tttgtgaatacaacagtattttgcgtcttgcatttctagctggttgctgaagtttctgta 506
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5681 tttgtgaatacaacagtattttgcgtcttgcatttctagctggttgttgaagtttctgta 5740
Query: 507 ttatttcattcattcaattaattaataatatatacaaaccattttacatttagatttaca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5741 ttatttcattcattcaattaattaataatatatacaaaccattttacatttagatttaca 5800
Query: 567 ggaatgggaaattatactttggcatgtaccctttaattaggcagtgcgtattatgatttc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5801 ggaatgggaaattatactttggcatgtaccctttaattaggcagtgcgtattatgatttc 5860
Query: 627 gcaatatgaaagagggctatgaggaaagaag-aaataacaaaagattgtgtcctagaaca 685
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5861 gcaataggaaagagggctatgaggaaagaagaaaataacaaaagattgtgtcctagaaca 5920
Query: 686 tgccatggtcattagaatatgaatataggtatggagttatgattcgtagatgagtgagtg 745
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5921 tgccatggtcattagaatatgaataaaggtatggagttatgattcgtagatgagtgagtg 5980
Query: 746 gctttctttttc-attttcgt-aagccattccaaaaattctggagtgaagtaactgatga 803
|||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5981 gcttcttttttcaattttcgtcaagccattccaaaaattctggagtgaagtaactgatga 6040
Query: 804 ttaagcgagcaccagctctgatgaacccatagtgcgattcataggc-atactttt-aaaa 861
||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |||
Sbjct: 6041 ttaagcgagcaccagctctgaggaacccatagtgcgattcaaaggcaatacttttcaaat 6100
Query: 862 naacaacaaccttctctgcatcagcatgttacataggcgtattcac 907
||||||| ||||||||||| |||||||| ||||| ||||||||||
Sbjct: 6101 caacaacacccttctctgcagcagcatgtaacata-gcgtattcac 6145
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7547
Number of Sequences: 1807
Number of extensions: 7547
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)