BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH03RM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1451 1386 0.0
>3x_Contig1451
Length = 8346
Score = 1386 bits (699), Expect = 0.0
Identities = 787/809 (97%), Gaps = 6/809 (0%)
Strand = Plus / Minus
Query: 44 gctttcaaaacagcaatacttggtttgttagcaagtctcttttgtctttctgatatattt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 gctttcaaaacagcaatacttggtttgttagcaagtctcttttgtctttctgatatattt 804
Query: 104 tgaagtacttcatccgcttgatcctcaaaactgtcggaaccctcagcatcctcatcgtca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tgaagtacttcatccgcttgatcctcaaaactgtcggaaccctcagcatcctcatcgtca 744
Query: 164 atatcatgcccgttcttttcgtactatggcttgttcccgttttgaatcatcatcctcatc 223
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atatca-gcccgttcttttcgtactatggcttgttcccgttttgaatcatcatcctcatc 685
Query: 224 ggcccctgtagccgaagctttaaatctttgtaacactttattgagactttcatccttgat 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggcccctgtagccgaagctttaaatctttgtaacactttattgagactttcatccttgat 625
Query: 284 aactaaaggttcattaattacctgttgcgaggtgttgccattctctgatgacacttgttg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aactaaaggttcattaattacctgttgcgaggtgttgccattctctgatgacacttgttg 565
Query: 344 taacaaactggaaagcctcttcttcctttcttctgcatcctctttcacagatccattttt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taacaaactggaaagcctcttcttcctttcttctgcatcctctttcacagatccattttt 505
Query: 404 attctttgaacggcgtttattagccttggctttctttaccatagtgcaatatctggtggg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attctttgaacggcgtttattagccttggctttctttaccatagtgcaatatctggtggg 445
Query: 464 cagctgactgttgctatattaataagcagtcgagccagaatactattgtatgctcatctg 523
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagttgactgttgttatattaataagcagtcgagccagaatactattgtatgctcatctg 385
Query: 524 tcaatttgccttttttatgtcctttattaagaccacatatatttttcaattaaatgttga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcaatttgccttttttatgtcctttattaagaccacatatatttttcaattaaatgttga 325
Query: 584 aatttataccattatattatacgtgaacagatatggcaacattcaacggtgctgtataca 643
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 324 aatttataccattatattatacgtgaacagatatggcaacattcaacggtcttgtataca 265
Query: 644 tgtgatagatgctatatgactatggatcataacgaatcactcttctnaattcgtgagtct 703
||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||
Sbjct: 264 tgtgatagatgctatatgactatggataataacgaatcactcttctaaattcttgagtct 205
Query: 704 atcgntgattgaattcgcgaatttgtt-aattgtacatcatcgtcattcactttacgca- 761
|||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 204 atcgttgattgaatcggcgaatttgttaaattgtacatcatcgtcattcactttccgcag 145
Query: 762 ttagtcctggaacttttgctgaatattctg-agctatctcaaacacggtgggaacatctt 820
| ||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 144 taagtcctgtaacttttgctgaata-tctgaagctatctcaaacacggtgggaacatctt 86
Query: 821 gcttgggattaccactatttctctgatcc 849
|||| ||||||||||||| ||||||||
Sbjct: 85 cgttggaattaccactattt-tctgatcc 58
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7423
Number of Sequences: 1807
Number of extensions: 7423
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)