BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC31ZH04FM1.SCF screened BAC_end (936 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig929 1251 0.0 >3x_Contig929 Length = 3696 Score = 1251 bits (631), Expect = 0.0 Identities = 684/695 (98%), Gaps = 5/695 (0%) Strand = Plus / Minus Query: 91 cgatgctctatcactgcttagtgatttttccagtatgcttgattttactgcgtgaatttc 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3073 cgatgctctatcactgcttagtgatttttccagtatgcttgattttactgcgtgaatttc 3014 Query: 151 ttggaacacttttgtagaatcaatcgcagaatttatattataatgtagctttttcatctc 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3013 ttggaacacttttgtagaatcaatcgcagaatttatattataatgtagctttttcatctc 2954 Query: 211 ttccaaaacaaaggggatgcggacacccaattgaaccaaacgcaacaatgcatgtgttat 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2953 ttccaaaacaaaggggatgcggacacccaattgaaccaaacgcaacaatgcatgtgttat 2894 Query: 271 tttattgtatttaccagggtgttgtaatgggtattgagatcgattccggtagccatccaa 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2893 tttattgtatttaccagggtgttgtaatgggtattgagatcgattccggtagccatccaa 2834 Query: 331 aacgatggaagcatagtgcttgatttgatgcttttctttatcaggtctgtggatcttgtc 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2833 aacgatggaagcatagtgcttgatttgatgcttttctttatcaggtctgtggatcttgtc 2774 Query: 391 ggccaagctgaagacctggtctatatgacttttgaatttggagtcggtagacaaggattc 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2773 ggccaagctgaagacctggtctatatgacttttgaatttggagtcggtagacaaggattc 2714 Query: 451 ctctgatttagggagatcttcatcataaagttttaattcttgaaatcgttggaagatata 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2713 ctctgatttagggagatcttcatcataaagttttaattcttgaaatcgttggaagatata 2654 Query: 511 aggcatctttataccttgacttgttaactctgttaatatttgatatattgttgccttcaa 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2653 aggcatctttataccttgacttgttaactctgttaatatttgatatattgttgccttcaa 2594 Query: 571 gaaaaccgaactgggttgttcatagaaaatctctgattcaaatgccagtagtcggtcaca 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2593 gaaaaccgaactgggttgttcatagaaaatctctgattcaaatgccagtagtcggtcaca 2534 Query: 631 aagtgtattgatataaatcttattatccttcgatcgtgaagtgttacgcagtagttcttt 690 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 2533 aagtgtattgatataaatcttattatcctcggatcgtgaagtgttacgcagtagttcttt 2474 Query: 691 aactttattgatagtttctaccaaaaggttggggtttcctcacatcttttgattatatct 750 ||||||||||||||||||||| |||||||| | ||||||||||||| |||||| ||||| Sbjct: 2473 aactttattgatagtttctacgaaaaggtt-gtgtttcctcacatc-tttgataatatc- 2417 Query: 751 tttggaggacactctgaaagttgaaatgacatttc 785 |||||| ||||||||| |||||||| ||||||||| Sbjct: 2416 tttgga-gacactctg-aagttgaagtgacatttc 2384 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7276 Number of Sequences: 1807 Number of extensions: 7276 Number of successful extensions: 44 Number of sequences better than 1.0e-20: 1 length of query: 936 length of database: 10,358,551 effective HSP length: 16 effective length of query: 920 effective length of database: 10,329,639 effective search space: 9503267880 effective search space used: 9503267880 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)