BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH04RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1687 1362 0.0
>3x_Contig1687
Length = 12800
Score = 1362 bits (687), Expect = 0.0
Identities = 790/818 (96%), Gaps = 5/818 (0%)
Strand = Plus / Plus
Query: 43 gcttggcgaagggctagcactaccagcagcacttgccaactcagataaccttgaactatc 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4108 gcttggcgaagggctagcactaccagcagcacttgccaactcagataaccttgaactatc 4167
Query: 103 aacgtgttggaaactgttgttatttttattattaccattagtattattgtcattattatt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4168 aacgtgttggaaactgttgttatttttattattaccattagtattattgtcattattatt 4227
Query: 163 attgttaaggttactgctatgattcacggtattgatattatggtcattaatattactttt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4228 attgttaaggttactgctatgattcacggtattgatattatggtcattaatattactttt 4287
Query: 223 gatgttgttgacattgggaataggagtatcaagacctccgacaggcatagtatccatgac 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4288 gatgttgttgacattgggaataggagtatcaagacctccgacaggcatagtatccatgac 4347
Query: 283 gctgccttcttgtttaacttttgccctagattttttattcgatgggacaggaacggtact 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4348 gctgccttcttgtttaacttttgccctagattttttattcgatgggacaggaacggtact 4407
Query: 343 gccttctgttgttgttgcaccaacatgcctattatcttgttcgttagccgtacccgttct 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4408 gccttctgttgttgttgcaccaacatgcctattatcttgttcgttagccgtacccgttct 4467
Query: 403 tgatcctctagtaacagtagccacactagactgcggcgatgactgctctcctacagcccc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4468 tgatcctctagtaacagtagccacactagactgcggcgatgactgctctcctacagcccc 4527
Query: 463 gtcatacccatatttggcaggctggatacatttcacacctgctttcaaacacgcggtgca 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4528 gtcatacccatatttggcaggctggatacatttcacacctgctttcaaacacgcggtgca 4587
Query: 523 actgggaatcttgtgatcacacttttgttttcgncgttgacacaacatacaagcacgatg 582
|||||||||||||||||||||||||||||| || ||||||||||||| |||||||||| |
Sbjct: 4588 actgggaatcttgtgatcacacttttgtttccgccgttgacacaacaaacaagcacga-g 4646
Query: 583 acgggcctttcttatctttcaacaactgattttgtatcctgtccagccatctcgagctcc 642
| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4647 aacggcccttcttatctttcaacaactga-tttgtatcctgtccagccatctcgagctcc 4705
Query: 643 agctgaaaccgctgaatattctccaagctgactttctttcgaagacgacccatcggtacc 702
|||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct: 4706 agctgaaaccgctgaatattctccaagctgactttcttcggaggacgacccatcgttacc 4765
Query: 703 tagcttctctcgcttctgataatgtccgataaaagaacttttatcctttgaaagtaacaa 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4766 tagcttctctcgcttctgataatgtccgataaaagaacttttatcctttgaaagtaacaa 4825
Query: 763 ttttattatccttaaccagaaggaaaagaccatagaaacctggacactaataatccgcct 822
|| ||||| | | ||||||| |||||||| | | ||||||||||||||||||||| ||
Sbjct: 4826 ttatattaacttaaaccagagagaaaagacgaaaagaacctggacactaataatccg-ct 4884
Query: 823 tggatcttaacctagtatcagcttttcctttccaaatt 860
|| ||||| | ||||||||||| ||||||| |||||||
Sbjct: 4885 tgtatctt-agctagtatcagc-tttccttcccaaatt 4920
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7477
Number of Sequences: 1807
Number of extensions: 7477
Number of successful extensions: 127
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)