BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH05FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1428 1483 0.0
>3x_Contig1428
Length = 9146
Score = 1483 bits (748), Expect = 0.0
Identities = 820/835 (98%), Gaps = 7/835 (0%)
Strand = Plus / Minus
Query: 85 accagtacttaattcgtcatacgtatgtaaatataccaaatt-caggcagaaccagttgc 143
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 8994 accagtacttaattcgtcatacgtatgtaaatataccaaaatacaggcagaaccagttgc 8935
Query: 144 catttaaattagcagttgtaaacctcaataactttctttacctaaattccgttgttgcat 203
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 8934 catttaaattagcagttgtaaacctcaatcactttctttacctaaattccgttgttgcat 8875
Query: 204 cgcagcgttctttacctaaacaattaacttttcacgtccagctccatgactttaatgaaa 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8874 cgcagcgttctttacctaaacaattaacttttcacgtccagctccatgactttaatgaaa 8815
Query: 264 aattgtgtgaaatatagggaaaagatatatcaactgatctcattgcaactttttttttaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8814 aattgtgtgaaatatagggaaaagatatatcaactgatctcattgcaactttttttttaa 8755
Query: 324 acgtagaccagaataacaggaataacgctcaatcagcacatctaagaatccttagcggag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8754 acgtagaccagaataacaggaataacgctcaatcagcacatctaagaatccttagcggag 8695
Query: 384 tcgctacagctgaaatataattcgtatagacgttagcgtcaagaaatagtagatacacaa 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8694 tcgctacagctgaaatataattcgtatagacgttagcgtcaagaaatagtagatacacaa 8635
Query: 444 tat-aaattgacaagcaatggtttcattgacaaagagagtattatttgaagttattccga 502
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8634 tatcaaattgacaagcaatggtttcattgacaaagagagtattatttgaagttattccga 8575
Query: 503 atccacctgatgagacgactttgactttatcctctaccaccaacaaaggtcactacatat 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8574 atccacctgatgagacgactttgactttatcctctaccaccaacaaaggtcactacatat 8515
Query: 563 ccgttagacctttcgtcaatgctgaaggtaaggaattcccatttgaatgggcttttggtg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8514 ccgttagacctttcgtcaatgctgaaggtaaggaattcccatttgaatgggcttttggtg 8455
Query: 623 gtacatctgatcacattgaattgaaaaaaatcaatgagagagccaactccttaaacttca 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8454 gtacatctgatcacattgaattgaaaaaaatcaatgagagagccaactccttaaacttca 8395
Query: 683 attttaagttcgatacaaatgtgaagttgaatgttccagaaactcatcgtggtgttatca 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8394 attttaagttcgatacaaatgtgaagttgaatgttccagaaactcatcgtggtgttatca 8335
Query: 743 aaaccgtcttcaagacttgggattccggtttggttgaagaaactggttctgttttcccat 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8334 aaaccgtcttcaagacttgggattccggtttggttgaagaaactggttctgttttcccat 8275
Query: 803 ggggaatcgaaagtacngaagtcaagttcagagtaactttggc-accggtgggatccaac 861
|||||| |||| |||| |||||||||||||||| ||||||||| |||||| |||||||||
Sbjct: 8274 ggggaaccgaaggtacggaagtcaagttcagag-aactttggcaaccggt-ggatccaac 8217
Query: 862 aggac-tggatttgtcgagttaaac-atgaaaagaacgtagatcaagctgctaat 914
| ||| || |||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 8216 aagacttgaatttgtcgagttaaacaatgaaaaggacgtagatcaagctgctaat 8162
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7207
Number of Sequences: 1807
Number of extensions: 7207
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)