BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH06FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1534 0.0
>3x_Contig1652
Length = 14842
Score = 1534 bits (774), Expect = 0.0
Identities = 854/876 (97%), Gaps = 4/876 (0%)
Strand = Plus / Minus
Query: 88 aacggatctcgataattgtttcattgtctaacttgtgtagagagcaagttattgaaaaag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823 aacggatctcgataattgtttcattgtctaacttgtgtagagagcaagttattgaaaaag 4764
Query: 148 tttaggagagaccgaaaagaggaaatatttaacaatgctttctagtataagaccgggtac 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4763 tttaggagagaccgaaaagaggaaatatttaacaatgctttctagtataagaccgggtac 4704
Query: 208 cgtggttctatcttgtactttcaagcagagcttggctagctataggggtgttactgctgt 267
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4703 cgtggttctatctcgtactttcaagcagagcttggctagctataggggtgttactgctgt 4644
Query: 268 tagtttgtattctacaaataattctgcacaaaagtccgattcaaccaaagaaaccacatc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4643 tagtttgtattctacaaataattctgcacaaaagtccgattcaaccaaagaaaccacatc 4584
Query: 328 cactgaaaagggcaaaagcgttgcaccagaagacgttagaactaagagacgtgaattatc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4583 cactgaaaagggcaaaagcgttgcaccagaagacgttagaactaagagacgtgaattatc 4524
Query: 388 cagttccaagtacgaatctgcatcatatcaacttccaaaatggaaagaagctcttggtga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4523 cagttccaagtacgaatctgcatcatatcaacttccaaaatggaaagaagctcttggtga 4464
Query: 448 atttgttattagtacgcttaatttggatatggataaagttagagccggtccaattgctgg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4463 atttgttattagtacgcttaatttggatatggataaagttagagccggtccaattgctgg 4404
Query: 508 ttcatactattactcgatctgtaaagaacaaggtcttcaatatgaggatgaaccactttc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4403 ttcatactattactcgatctgtaaagaacaaggtcttcaatatgaggatgaaccactttc 4344
Query: 568 taagacagccaagttcttttacgatgatttgaagttgccaaagacattctcccaatggta 627
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4343 taagacagccaagttcttttacgaggatttgaagttgccaaagacattctcccaatggta 4284
Query: 628 ccaaattactatcctacatgaatggatgttattcgtgagaatgagagctatgccgttcat 687
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4283 ccaaattactatcctacatgaatggatgttattcgtgagaatgagagctatgccgttcaa 4224
Query: 688 atacggcaagatttatcagcagaagttggtggatagaacatttgccgatatcgaatagag 747
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4223 atacggcaagaattatcagcagaagttggtggatagaacatttgccgatatcgaaaagag 4164
Query: 748 attgtatgacgaaatgaacgtacatttcggtagaaatacagatcaatatctaaaagattt 807
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 4163 attgtatgacgaaatgaacgtacattccggtagaataacagatcaatatctaaaagattt 4104
Query: 808 caattctcaacttcgcggtgctgtatttgcttacgatgaaagtttcttctncgnaaatgc 867
|||||||||||||||||||||||||||||||||||||||| ||||||||| || | ||||
Sbjct: 4103 caattctcaacttcgcggtgctgtatttgcttacgatgaaggtttcttctccggagatgc 4044
Query: 868 cgctcttgcgtcagctatctgga-aaattggttcggtggtaagaaatatatggat-ttgt 925
||||||||||||||||||||||| ||||| |||||||||||||||| |||| ||| | ||
Sbjct: 4043 cgctcttgcgtcagctatctggagaaatttgttcggtggtaagaaaaatattgatatggt 3984
Query: 926 gcactgggaag-catgg-aagattcgttcgtgccca 959
||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 3983 gcacttggaagccatggtaagatacgttcgtgccca 3948
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6934
Number of Sequences: 1807
Number of extensions: 6934
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)