BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH06RM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1575 1534 0.0
>3x_Contig1575
Length = 11952
Score = 1534 bits (774), Expect = 0.0
Identities = 888/921 (96%), Gaps = 4/921 (0%)
Strand = Plus / Minus
Query: 45 cttggaattcaacaccagcagcattcaaatcatgttcaatcaaagcattagctggttcca 104
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 8067 cttggaattcaacaccagcagcagccaaatcatgttcaatcaaagcattagctggttcca 8008
Query: 105 aaagatgagaatggaaaggagaaacgattggcaaaaacctgttaaaaaatttcaactttc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8007 aaagatgagaatggaaaggagaaacgattggcaaaaacctgttaaaaaatttcaactttc 7948
Query: 165 tttcgctgaatgggattcttgcttgatccaaaccagcaggggccttagcctttcttattg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 7947 tttcgctgaatgggattcttgcttgatccaaaccagcaggggccttagcctttctcaagg 7888
Query: 225 tcaagttcaaaccatatagagattgtggtggacctgatacgaccaagtttctggcaccat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7887 tcaagttcaaaccatatagagattgtggtggacctgatacgaccaagtttctggcaccat 7828
Query: 285 tgaccaaagaaacaacgatatgcttggactctggtaagtgagcgttagtttgatcgatat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7827 tgaccaaagaaacaacgatatgcttggactctggtaagtgagcgttagtttgatcgatat 7768
Query: 345 aagtttgaacttgatcctgagtcaagttagagatggacaacataggagttggtacacctt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7767 aagtttgaacttgatcctgagtcaagttagagatggacaacataggagttggtacacctt 7708
Query: 405 caccgttttcgacagaatcttccaacatagatggtggtaaagaggtttttgggtaaactt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7707 caccgttttcgacagaatcttccaacatagatggtggtaaagaggtttttgggtaaactt 7648
Query: 465 ggtaacatctgacaccgatgaagaatagtaacttgatagtcttagtcatagccttgaaat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7647 ggtaacatctgacaccgatgaagaatagtaacttgatagtcttagtcatagccttgaaat 7588
Query: 525 aagattcccaagaatcagcttcagcgattgcaacggcagtggccaaaccttgggaatgac 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7587 aagattcccaagaatcagcttcagcgattgcaacggcagtggccaaaccttgggaatgac 7528
Query: 585 cagtggcgccgactatgctatctcttagttgaccgggggtgaagtttaagattctagcag 644
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7527 cagtggcgccgactaggctatctcttagttgaccgggggtgaagtttaagattctagcag 7468
Query: 645 ttaaagtgtaatgcacgaattgaataacaccgattaaaggacaagatattggaattgaca 704
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 7467 ttaaagtgtaatgcacgaattgaataacaccgattaaaggacaagaaattggaattgaca 7408
Query: 705 tcatgtagtcagttccaggagtcttttgtggttgttccaaccaagtcaagatatcgaaac 764
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 7407 acaagtagtcagttccaggagtcttttgtggttgttccaaccaagtcaggatatcgaaac 7348
Query: 765 cttgggtgtatagctttttcgtatcatcagtggtgggtgatcaattnccctaaagtttct 824
|||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 7347 cttgggtgtatagcttttcggtatcatcagtggt-ggtgatcaattcccctagagtttct 7289
Query: 825 gcagcagacttgattacatcagagataaagcagttgttaggtttgattaaggtcacgcca 884
|||||||||||||| ||||||||||| ||||||||| |||||||||| ||| |||||| |
Sbjct: 7288 gcagcagacttgataacatcagagattaagcagttg-taggtttgataaagttcacgcaa 7230
Query: 885 cttcttcgaaataatcattcgttgttaccctgttccccaataattgggaccaactgagct 944
| ||||||||||| ||| ||| ||||||| ||| | |||| ||||| |||||||| ||||
Sbjct: 7229 c-tcttcgaaatagtca-tcggtgttaccttgtccaccaaaaattgagaccaacttagct 7172
Query: 945 tgaccgtcagcaacacccttg 965
||||| ||||||||||||||
Sbjct: 7171 tgaccagcagcaacacccttg 7151
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7201
Number of Sequences: 1807
Number of extensions: 7201
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)