BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC31ZH07FM1.SCF screened BAC_end
         (989 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1720                                                        1134   0.0  

>3x_Contig1720 
          Length = 19870

 Score = 1134 bits (572), Expect = 0.0
 Identities = 611/620 (98%), Gaps = 3/620 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   cttacatttggactctgcatatccgatattagaattcgaatacgtacacaacttattctc 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9486 cttacatttggactctgcatatccgatattagaattcgaatacgtacacaacttattctc 9427

                                                                        
Query: 147  ctttaaacatcggctacacggtctttcaccatcacatttggtttttgatttcctacaagc 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9426 ctttaaacatcggctacacggtctttcaccatcacatttggtttttgatttcctacaagc 9367

                                                                        
Query: 207  atcacatgcttttgatacccttctctttatggttggtaattcggcagagctgcgagaacc 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9366 atcacatgcttttgatacccttctctttatggttggtaattcggcagagctgcgagaacc 9307

                                                                        
Query: 267  attgaccattataaagtgatgcgatgcaaatgaatatgtgttgtatacacggaaaggtga 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9306 attgaccattataaagtgatgcgatgcaaatgaatatgtgttgtatacacggaaaggtga 9247

                                                                        
Query: 327  agaaaaacaaaagctgatccagagaaaaaaaatatttaggatatgatatgaaagactgat 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9246 agaaaaacaaaagctgatccagagaaaaaaaatatttaggatatgatatgaaagactgat 9187

                                                                        
Query: 387  gattccaaacaagtcctgagtatttccgcgaattagtagtttcaaaaaagataacaaccg 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9186 gattccaaacaagtcctgagtatttccgcgaattagtagtttcaaaaaagataacaaccg 9127

                                                                        
Query: 447  cttgaatttggttcacttttcttaatcgttgtccttcttctacttcttcctctgctttat 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9126 cttgaatttggttcacttttcttaatcgttgtccttcttctacttcttcctctgctttat 9067

                                                                        
Query: 507  ctgataagttcgtagggccccaatttaactccagtcttcgatgaagaagacagggatgtt 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9066 ctgataagttcgtagggccccaatttaactccagtcttcgatgaagaagacagggatgtt 9007

                                                                        
Query: 567  atatttgactaaatatctcctctttatttccgagttcctaaacaagaagactcaattata 626
            ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 9006 atatttgactaaatatctcctctttatttccgagttcctaaacagaaagactcaattata 8947

                                                                        
Query: 627  taccggattattcgatccaagtccatttgataatcaatggatttcgccttcaaagagcat 686
             | ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 8946 -aacggattagtcgatccaagtccatttgataatcaatgga-ttcgccttcaaagagca- 8890

                                
Query: 687  ttattaaaatcaaataaacc 706
             || ||||||||||||||||
Sbjct: 8889 ataataaaatcaaataaacc 8870


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8145
Number of Sequences: 1807
Number of extensions: 8145
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)