BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH07RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 1405 0.0
>3x_Contig1766
Length = 23951
Score = 1405 bits (709), Expect = 0.0
Identities = 791/812 (97%), Gaps = 5/812 (0%)
Strand = Plus / Plus
Query: 44 gctttatcactatctttgtcgttttttgcgtttcccttacgccaaatcatcatcttaaag 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16490 gctttatcactatctttgtcgttttttgcgtttcccttacgccaaatcatcatcttaaag 16549
Query: 104 agaaaccgttggtggctttgatatactacacatctttttactgatctgcagcatatatga 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16550 agaaaccgttggtggctttgatatactacacatctttttactgatctgcagcatatatga 16609
Query: 164 gtgacaatccgtttgagtcttatctcgcacgagaccagcaaccgccacagcccgctgtcg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16610 gtgacaatccgtttgagtcttatctcgcacgagaccagcaaccgccacagcccgctgtcg 16669
Query: 224 atgtgctttcgcagcctaatgcctcactagaatattgcacggtgtcagtggaagatacga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16670 atgtgctttcgcagcctaatgcctcactagaatattgcacggtgtcagtggaagatacga 16729
Query: 284 tagcacaattaggaactgatttcgataatggtttatccaatccatcagaaattgcttata 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16730 tagcacaattaggaactgatttcgataatggtttatccaatccatcagaaattgcttata 16789
Query: 344 ggaaatcaatttggggatcaaacgaagtcctacctgatgagaaagtatctctttggaaaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16790 ggaaatcaatttggggatcaaacgaagtcctacctgatgagaaagtatctctttggaaaa 16849
Query: 404 aattcttgtctacattcattgaagaccctttaattcttttgttgatcggatctgcagtta 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16850 aattcttgtctacattcattgaagaccctttaattcttttgttgatcggatctgcagtta 16909
Query: 464 tatctttcttaatgggaaacatcgatgattccatcagtattgctctggccatcatcattg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16910 tatctttcttaatgggaaacatcgatgattccatcagtattgctctggccatcatcattg 16969
Query: 524 ttgttaccgtcgggtttgtacaagaatataagtcagagaagtcattagaagcattaaaca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16970 ttgttaccgtcgggtttgtacaagaatataagtcagagaagtcattagaagcattaaaca 17029
Query: 584 agttagtcccagcggaatgtcatttgacaagatcagggcagttatcccatgttcttgcgt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17030 agttagtcccagcggaatgtcatttgacaagatcagggcagttatcccatgttcttgcgt 17089
Query: 644 canactttattccaggtgatttggtcagatttaaggtcggtgatagaattcctgctgatt 703
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17090 caaacttagttccaggtgatttggtcagatttaaggtcggtgatagaattcctgctgatt 17149
Query: 704 taagaattgtag-atctatcgatttgggcgtagatgaaagtaattggacaggtgaaaatg 762
|||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 17150 taagaattgtagaatctatcgatttgtgcgtagatgaaagtaatttgacaggtgaaaatg 17209
Query: 763 aaccagttcccaagagttcttggggcattgaacccctaagaactactcttcatttaccgg 822
||||||| | ||||||||| ||| ||| || | ||||||||||||||| |||| |||| |
Sbjct: 17210 aaccagtacacaagagttc-tggtgcagtgga-ccctaagaactactc-tcatatacctg 17266
Query: 823 gatcccttatttccaattggggattgaaactg 854
||||| ||| ||||| |||| ||| |||||||
Sbjct: 17267 gatccatta-ttccagttggcgatagaaactg 17297
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6338
Number of Sequences: 1807
Number of extensions: 6338
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)