BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH08FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1732 1554 0.0
>3x_Contig1732
Length = 24266
Score = 1554 bits (784), Expect = 0.0
Identities = 809/815 (99%), Gaps = 2/815 (0%)
Strand = Plus / Minus
Query: 88 caaggagtaagaatgcagaccaagtgcctaagaattacgagagtccattatttcctttac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18267 caaggagtaagaatgcagaccaagtgcctaagaattacgagagtccattatttcctttac 18208
Query: 148 ttgaagacgaagaattccctaaagtgaaaggtgctaatagaccgagacttcctccaacgg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18207 ttgaagacgaagaattccctaaagtgaaaggtgctaatagaccgagacttcctccaacgg 18148
Query: 208 gtaaaattagtacaaactacaagaagaaacatgtctcagaattatatactttgcctgaag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18147 gtaaaattagtacaaactacaagaagaaacatgtctcagaattatatactttgcctgaag 18088
Query: 268 aggaagagccccaagtgaaagttgaagtctctgaagataccgcctcgaaacccaccgatg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18087 aggaagagccccaagtgaaagttgaagtctctgaagataccgcctcgaaacccaccgatg 18028
Query: 328 gaatcttcaaatctccagcgacagtcgacgataatggattttacgttgaggaaactccac 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18027 gaatcttcaaatctccagcgacagtcgacgataatggattttacgttgaggaaactccac 17968
Query: 388 tctcatcattcagtttaagtttaccagggattcctgatacgtaggaacacagaccagcga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17967 tctcatcattcagtttaagtttaccagggattcctgatacgtaggaacacagaccagcga 17908
Query: 448 atatcttgtagctcttagagttatatacagaaataatacaagagtattaaaaaacgtcta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17907 atatcttgtagctcttagagttatatacagaaataatacaagagtattaaaaaacgtcta 17848
Query: 508 taaaagttcctttttttagcataacgatcttaatattaatgtcaacatagtaaaagggta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17847 taaaagttcctttttttagcataacgatcttaatattaatgtcaacatagtaaaagggta 17788
Query: 568 ccagtagccagtactgatttacttccctaatatacttggaagtacaaggccaaataacag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17787 ccagtagccagtactgatttacttccctaatatacttggaagtacaaggccaaataacag 17728
Query: 628 taatactcagttttgctcctctacaacctcttctagaatttccacctctatgtctgggta 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17727 taatactcagttttgctcctctacaacctcttctagaatttccacctctatgtctgggta 17668
Query: 688 tccaatatcacggaaagcttccatcaacttatctttgagctcttgcgctgtcccgccttt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17667 tccaatatcacggaaagcttccatcaacttatctttgagctcttgcgctgtcccgccttt 17608
Query: 748 ataaagagattctatctcatcagtagcaaatatatccggaactagaccagtgctttttct 807
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 17607 ataaggagattctatctcatcagtagcaaatatatccggaactagaccagtgc-ttttct 17549
Query: 808 cgggtaaagagttgcttgatgtctcatccgtttgattaactgtcattgagtcaaaat-ta 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 17548 cgggtaaagagttgcttgatgtctcatccgtttgattaactgtcattgagtcaaaatata 17489
Query: 867 ccatgttatgaattcgcnattcatttaaaagggag 901
||||||||||||| || |||||||||||||||||
Sbjct: 17488 ccatgttatgaatcggcaattcatttaaaagggag 17454
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5879
Number of Sequences: 1807
Number of extensions: 5879
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)