BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH09FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig272 1187 0.0
>3x_Contig272
Length = 1587
Score = 1187 bits (599), Expect = 0.0
Identities = 624/630 (99%), Gaps = 2/630 (0%)
Strand = Plus / Minus
Query: 93 cttcgtaaaacatccaaaacagacctgtcatatcacgacgggtattcatcagagtcttct 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cttcgtaaaacatccaaaacagacctgtcatatcacgacgggtattcatcagagtcttct 569
Query: 153 ggcgaagagaaggaacgtgctatttccgaagttagcctgggacagtatgttgttcattct 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggcgaagagaaggaacgtgctatttccgaagttagcctgggacagtatgttgttcattct 509
Query: 213 gcagaatcttttaaattcagaaaccctgtcaggaactctgttctcgattcaagcgatgat 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gcagaatcttttaaattcagaaaccctgtcaggaactctgttctcgattcaagcgatgat 449
Query: 273 gacatagattatactgatgaggatggagatttagaagtcactaaaagtggctatttcgct 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gacatagattatactgatgaggatggagatttagaagtcactaaaagtggctatttcgct 389
Query: 333 gcgatggttgatgaggacaaggaaatcgacgattcagataggcatacattgaataacaac 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gcgatggttgatgaggacaaggaaatcgacgattcagataggcatacattgaataacaac 329
Query: 393 gatacagatggactgacagctgatagcgatgttaattcgataacggagagcgtaacgaaa 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gatacagatggactgacagctgatagcgatgttaattcgataacggagagcgtaacgaaa 269
Query: 453 cgattgagtcaatcctctataacccaatcggacgttccagatcagaattctgaaaatgac 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cgattgagtcaatcctctataacccaatcggacgttccagatcagaattctgaaaatgac 209
Query: 513 gtcggaggatattctgacagctctgaagacgaggaagacggcccacagaaattagcattc 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gtcggaggatattctgacagctctgaagacgaggaagacggcccacagaaattagcattc 149
Query: 573 tcaaccagggagtcaatcaatctatgcaagtggaaaccagacaccgatgcattccgatct 632
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 148 tcaaccagggagtcaatcaatctaggcaagtggaaaccagacaccgatgcattccgatct 89
Query: 633 ggttntgttactgagaccatcgatatcaacaatcctcccgaatgatacaccgtaaatgat 692
|||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 88 ggttttgttactgagaccatcgatatcaacaatcctcccg-aggatacaccgtaaatgag 30
Query: 693 gacggggaaattgttgaagtgaacaaaaac 722
||| ||||||||||||||||||||||||||
Sbjct: 29 gac-gggaaattgttgaagtgaacaaaaac 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5435
Number of Sequences: 1807
Number of extensions: 5435
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)