BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH09RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig652 1497 0.0
>3x_Contig652
Length = 2532
Score = 1497 bits (755), Expect = 0.0
Identities = 895/924 (96%), Gaps = 15/924 (1%)
Strand = Plus / Plus
Query: 45 cttcttgtggatctacaagcaaaagtatgggcataacaagaacgtttctttggtcatttc 104
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 541 cttcttgtggatctacaagcaaaag-atgggcataacaagaacgtttctttggtcatttc 599
Query: 105 gaactttttgatatctgtcggtaaaataaattcggaaaaggcatataagttgttgatgga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gaactttttgatatctgtcggtaaaataaattcggaaaaggcatataagttgttgatgga 659
Query: 165 attcagtaaattaaaatgggtaccagaattctcttatgaattctacttggtcatgatcgc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 attcagtaaattaaaatgggtaccagaattctcttatgaattctacttggtcatgatcgc 719
Query: 225 aaactgcctcaatactaattggccattggtgaaaagaatatacaattatattttccctat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aaactgcctcaatactaattggccattggtgaaaagaatatacaattatattttccctat 779
Query: 285 gaaaacgtcattcaacaccacgaaaaacgataataaaatcaaaaattatttattgtatcc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gaaaacgtcattcaacaccacgaaaaacgataataaaatcaaaaattatttattgtatcc 839
Query: 345 aagtggattggaatcgatgcccagcactatattgacatacgccctaaggcaaaaagacga 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 aagtggattggaatcgatgcccagcactatattgacatacgccctaaggcaaaaagacga 899
Query: 405 cgagctcattatgaaattggtcgaagaatcgaatgtgaaaaagactacattccaaagagg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 cgagctcattatgaaattggtcgaagaatcgaatgtgaaaaagactacattccaaagagg 959
Query: 465 attgtacccttacatttttagctacttccaaagcataggttgcccggagccttacttact 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 attgtacccttacatttttagctacttccaaagcataggttgcccggagccttacttact 1019
Query: 525 tcgttttgtgaatattcatggttctgcactttcaaccgatagcaagcctctagtattcga 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 tcgttttgtgaatattcatggttctgcactttcaaccgatagcaagcctctagtattcga 1079
Query: 585 atttttgaatgcattggtcgaaaactatcaatcgcaacctatcttgaagaatgtatcaga 644
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1080 atttttgaatgcattggtcgaaaactatcaatcgcaacctatcttgaagaaggtatcaga 1139
Query: 645 tatgcctttcttttagagtgcctgtgaagcgttcactcttgataacgcttctgcagttaa 704
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1140 aatgcctttctttaagagtgcctgtgaagcgttcactcttgaaaacgcttctgcagttaa 1199
Query: 705 ttacgcaagtttcattgtttgtttccaaacgttgtggaaaactnnctcattgattcagga 764
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1200 ttacgcaggtttcattgtttgtttccaaacgttgtggaaaactcctcaattgattcagga 1259
Query: 765 ttattcttttacatc-tgaattgcatgggatagctgtttcgagattatatgatctagata 823
|||||||| | ||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1260 ttattcttaca-atcttgaattgcatggaatagctgtttcgagattatatgatctagata 1318
Query: 824 cctactatttggatattc-aaatgagatgttggttaga-ttcaaaaaac-aatggctgga 880
|||||||||||||||||| |||||||||||| |||||| |||||||||| |||||||| |
Sbjct: 1319 cctactatttggatattcaaaatgagatgtt-gttagatttcaaaaaacaaatggctgaa 1377
Query: 881 agattc--aaagctttgcgtt-actac-aacgaattcattt-gatgcc-acaaga-ttcc 933
|||||| ||||||||||||| ||||| ||||||||||||| |||||| |||||| ||||
Sbjct: 1378 agattccaaaagctttgcgttaactacaaacgaattcatttggatgccaacaagatttcc 1437
Query: 934 cctgtagcaattc-agctatgaaa 956
||||||||||||| ||||||||||
Sbjct: 1438 cctgtagcaattcaagctatgaaa 1461
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7778
Number of Sequences: 1807
Number of extensions: 7778
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)