BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH10FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1586 1187 0.0
>3x_Contig1586
Length = 12315
Score = 1187 bits (599), Expect = 0.0
Identities = 637/647 (98%), Gaps = 2/647 (0%)
Strand = Plus / Plus
Query: 85 ttcttatctgaagctgcgacttttctgcggggaaatgagatggaaaacggaacataaaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 ttcttatctgaagctgcgacttttctgcggggaaatgagatggaaaacggaacataaaaa 5303
Query: 145 atttaaaaaagaaaatggtgatacttgcaatgaataaatcagtgttatgggagcattgag 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 atttaaaaaagaaaatggtgatacttgcaatgaataaatcagtgttatgggagcattgag 5363
Query: 205 gttcgaacggcagaagcatggcattttcttgtttgtctcatttgattattattatttttt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5364 gttcgaacggcagaagcatggcattttcttgtttgtctcatttgattattattatttttt 5423
Query: 265 tttttttttttttaaatcagagcagcttaagcagttgtactttgtacatactttatacat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5424 tttttttttttttaaatcagagcagcttaagcagttgtactttgtacatactttatacat 5483
Query: 325 aatttgtacataatttgtacccagctcatacgttgcacgatacatgtaacgagcagcaca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5484 aatttgtacataatttgtacccagctcatacgttgcacgatacatgtaacgagcagcaca 5543
Query: 385 ttaactcgttgtgttaacgttttcaattgtaattttttattctgtgttagtaatttcaca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5544 ttaactcgttgtgttaacgttttcaattgtaattttttattctgtgttagtaatttcaca 5603
Query: 445 ggataattggtaagaaacgataccggagagtttttctggtttcactttaacaattatatc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5604 ggataattggtaagaaacgataccggagagtttttctggtttcactttaacaattatatc 5663
Query: 505 agcttttgcagtaaatacagcttctccccccgaggaacatggatgaagtacaatattcta 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5664 agcttttgcagtaaatacagcttctccccccgaggaacatggatgaagtacaatattcta 5723
Query: 565 tgatgagcaacggtgtgaagaaaagtcaaggagcgaaacagaatgggggtgctattcccg 624
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5724 tgatgagcagcggtgtgaagaaaggtcaaggagcgaaacagaatgggggtgctattcccg 5783
Query: 625 catgtgttgggcaggatttgagtaggaaagataagaagcgattacagtttgaaagggaag 684
|| ||||||||||||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct: 5784 caggtgttgggcaggatttgagtaggaaggataagaagcgattacagtttgaagggaaag 5843
Query: 685 tggggaaaataagaacgtcgtttggcaaaggataaaagatgtgcatt 731
|||| || ||||||||||||||| ||||||||| |||||||||||||
Sbjct: 5844 tgggaaagataagaacgtcgttt-gcaaaggat-aaagatgtgcatt 5888
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,282
Number of Sequences: 1807
Number of extensions: 22282
Number of successful extensions: 3848
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)