BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH10RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1497 0.0
>3x_Contig1749
Length = 22923
Score = 1497 bits (755), Expect = 0.0
Identities = 810/826 (98%), Gaps = 2/826 (0%)
Strand = Plus / Minus
Query: 51 atttgatgatcttgatgataatgaagagatgatgagatgtctgtacatctcaagactgtc 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21221 atttgatgatcttgatgataatgaagagatgatgagatgtctgtacatctcaagactgtc 21162
Query: 111 caagtaccaacaccagacggaaattgaacatgctcgtaaagttctctctgataagtatta 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21161 caagtaccaacaccagacggaaattgaacatgctcgtaaagttctctctgataagtatta 21102
Query: 171 tttgaaagataatcggactgtcttgttggctgagatagaacttttgaataaccaatccaa 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21101 tttgaaagataatcggactgtcttgttggctgagatagaacttttgaataaccaatccaa 21042
Query: 231 gtttactcagtgtatgaaattatgtgaacaagttctcgaagtcgatgagtataaccttga 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21041 gtttactcagtgtatgaaattatgtgaacaagttctcgaagtcgatgagtataaccttga 20982
Query: 291 agttctaccaatctatatacaatgtttgcattcgttcgcagccaagaacaaattgtttct 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20981 agttctaccaatctatatacaatgtttgcattcgttcgcagccaagaacaaattgtttct 20922
Query: 351 cctttcacacaaattggcagaaaacttccccaaatcaccagtgacatggttcgcagttgc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20921 cctttcacacaaattggcagaaaacttccccaaatcaccagtgacatggttcgcagttgc 20862
Query: 411 tacctactacctttgtatggggaaagtttcagaagcaaggaaatatttttctcgttcttc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20861 tacctactacctttgtatggggaaagtttcagaagcaaggaaatatttttctcgttcttc 20802
Query: 471 aataatggatccaagttttgggtactcttggcttggttttgctcatacttacgtcgctga 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20801 aataatggatccaagttttgggtactcttggcttggttttgctcatacttacgtcgctga 20742
Query: 531 gggagaacatgaacaagcattatcagcatattccactgctgctagatttttccctggaac 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20741 gggagaacatgaacaagcattatcagcatattccactgctgctagatttttccctggaac 20682
Query: 591 acatctaccacatctttatctncgaatgcaatacaatagaatggatgacctatctcttgc 650
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 20681 acatctaccacatctttatctcggaatgcaatacaatagaatggatgacctatctcttgc 20622
Query: 651 cgaagaatatttcatgatggcatatgacatgtgccccactgatcccctattacttaatga 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20621 cgaagaatatttcatgatggcatatgacatgtgccccactgatcccctattacttaatga 20562
Query: 711 gttgggtgtcatatatttcaagaagcaaaactacatcaaagctaagaagtacatgaaacg 770
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 20561 gttgggtgtcatatatttcaagaggcaaaactacatcaaagctaagaagtacatgaaacg 20502
Query: 771 tgcacacgattgcattaagaatatgaaattcgaaagtaaagctgggatttcgatttggga 830
|||||||||| || ||||||||||||| |||||||||||| |||| |||| ||| ||
Sbjct: 20501 tgcacacgatgcaataaagaatatgaaatcagaaagtaaagcttggatatcga-ttgtga 20443
Query: 831 t-aatttgggtcacccttacaggaaacttggtgaggacaaaagagc 875
| |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 20442 taaatttgggtcacacttacaggaaacttggtgaggacgaaagagc 20397
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7023
Number of Sequences: 1807
Number of extensions: 7023
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)