BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH11RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1638 1515 0.0
>3x_Contig1638
Length = 14042
Score = 1515 bits (764), Expect = 0.0
Identities = 845/865 (97%), Gaps = 6/865 (0%)
Strand = Plus / Plus
Query: 45 ctctatccttccatttgctagacgccaaactctgatagaaattattcggtagcttatcta 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11169 ctctatccttccatttgctagacgccaaactctgatagaaattattcggtagcttatcta 11228
Query: 105 atatagtttgtacggggaacatatcatatggatcgattgattggttatccagagcagcgg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11229 atatagtttgtacggggaacatatcatatggatcgattgattggttatccagagcagcgg 11288
Query: 165 cagactggccgttattacctgccattgctagatctccgtcatgatccaagggtaaatcag 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11289 cagactggccgttattacctgccattgctagatctccgtcatgatccaagggtaaatcag 11348
Query: 225 ttgaattgttatcactctgagccgggactgcccatataaactgagacggtgttgaagaag 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11349 ttgaattgttatcactctgagccgggactgcccatataaactgagacggtgttgaagaag 11408
Query: 285 gcggtatagtgccctggtacgattcaaacagtttatccaggtccttctgttgtatgggct 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11409 gcggtatagtgccctggtacgattcaaacagtttatccaggtccttctgttgtatgggct 11468
Query: 345 tcaacttccccaatagaagctcttgaagtacaggtttattaaaccatgtatatagttgta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11469 tcaacttccccaatagaagctcttgaagtacaggtttattaaaccatgtatatagttgta 11528
Query: 405 aaatcaactgcattgactcattcctcacagatttatccgcatgtgagcaaagtttatgta 464
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 11529 aaatcaactgcattgactcattcctcacagatttatccgcatgtgagcaaagtttaggta 11588
Query: 465 aaacttccactagaccctgtaacgattgcatcttctcctgttgagaaacgttcacgaacc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11589 aaacttccactagaccctgtaacgattgcatcttctcctgttgagaaacgttcacgaacc 11648
Query: 525 caaactgctctatcaactttacatgaaccattaacgctgcagtcaacagcttcggtaatt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11649 caaactgctctatcaactttacatgaaccattaacgctgcagtcaacagcttcggtaatt 11708
Query: 585 ttttggtccaaatcggcgtcagacaattgattgcatttacgatattatcatccaatgaca 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11709 ttttggtccaaatcggcgtcagacaattgattgcatttacgatattatcatccaatgaca 11768
Query: 645 cgacaagcgaaacgcatgccaatgaagcctctttcgtcgctgatttcgaggaagtcatac 704
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11769 cgacaagcgaaacgcaggccaatgaagcctctttcgtcgctgatttcgaggaagtcatac 11828
Query: 705 cttntctcaccagagct-gtatccatccctgaaccaattgacccggctgacacaaatctc 763
||| |||||||||| | | ||| ||||||||||||||||||||||||||||||||||
Sbjct: 11829 ctttctccaccagagctggaacccagccctgaaccaattgacccggctgacacaaatctc 11888
Query: 764 tgatctggggtacgtcgatcataaatttcaacaaactgtacaaggccttaacggcagatt 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11889 tgatctggggtacgtcgatcataaatttcaacaaactgtacaaggccttaacggcagatt 11948
Query: 824 ccttgtgc-acaacattggaatnncatacgtacccccgtgaaaatctcaggttttcttcc 882
||||||| ||||||||||||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 11949 -cttgtgcaacaacattggaatccaatacgta-ccccgtgaaaatctcagg-tttcttcc 12005
Query: 883 aatacttaattacggccactctctg 907
||||||| |||| |||||||||||
Sbjct: 12006 aatactt-attaacgccactctctg 12029
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5376
Number of Sequences: 1807
Number of extensions: 5376
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)