BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH12FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1520 1306 0.0
>3x_Contig1520
Length = 10750
Score = 1306 bits (659), Expect = 0.0
Identities = 727/745 (97%), Gaps = 4/745 (0%)
Strand = Plus / Minus
Query: 91 tttagcatgtgtatgggcttcatgaaacaaaatccacgtgacctcaaattactttacgta 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 tttagcatgtgtatgggcttcatgaaacaaaatccacgtgacctcaaattactttacgta 919
Query: 151 tcaattcccttttctgatctctaattgttttgtaaacaaaaaaaaaacataaacatcaag 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 tcaattcccttttctgatctctaattgttttgtaaacaaaaaaaaaacataaacatcaag 859
Query: 211 aacaactggaatcattatcaaacactagcggtctcaattgcatgaataaattcaattgaa 270
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 aacaactggaatcaataacaaacactagcggtctcaattgcatgaataaattcaattgaa 799
Query: 271 gagcattgatattgacttctggttccaataacgtagcctcattgaccaaattacaggtaa 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gagcattgatattgacttctggttccaataacgtagcctcattgaccaaattacaggtaa 739
Query: 331 actcaatttgggtacgaggctgttaggaaaacatgagtcaacagagggaaaaagtatggg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 actcaatttgggtacgaggctgttaggaaaacatgagtcaacagagggaaaaagtatggg 679
Query: 391 tatctgatgaacgagaggtttttgttcaaggtcaattggtagagcggaaagtggttaaga 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tatctgatgaacgagaggtttttgttcaaggtcaattggtagagcggaaagtggttaaga 619
Query: 451 ataagcaaggccaggaacaagcggttgctgtggttagtgtgaatggtaaggaaacagagt 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ataagcaaggccaggaacaagcggttgctgtggttagtgtgaatggtaaggaaacagagt 559
Query: 511 tttccgaagacgatgtagcctcggtgaatccttctacctttgataaagtggacgacttgt 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttccgaagacgatgtagcctcggtgaatccttctacctttgataaagtggacgacttgt 499
Query: 571 ctgaattgacgcatcttaatgaagcttctgttctttttaatttacagaacaggtaccaag 630
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 498 ctgaattgacgcatcttaatgaagcttctgttcttttcaatttacagaacaggtaccaag 439
Query: 631 atgatttgatttacacttattcaggattatttttagttgccattaacccatacagntata 690
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 438 atgatttgatttacacttattcaggattatttttagtggccattaacccatacagtaata 379
Query: 691 tcaagatatatagtaacagctatatcatattataccatggatctncgaatgaagattata 750
||||||||||||||||||||||||||| |||||||||||||||| |||| || ||| |||
Sbjct: 378 tcaagatatatagtaacagctatatcaaattataccatggatctccgaaggaggataata 319
Query: 751 aaccgcatatcttcgctgtcgctgaacaagc-taccagaatc-tttgcatc-aaagcaag 807
|||||||||||||||||||||||||||| || |||||||||| |||||||| |||||| |
Sbjct: 318 aaccgcatatcttcgctgtcgctgaacaggcttaccagaatcttttgcatcaaaagcagg 259
Query: 808 atcaatcaatctt-gttaccggtga 831
||||||| ||||| |||||||||||
Sbjct: 258 atcaatcgatcttggttaccggtga 234
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8737
Number of Sequences: 1807
Number of extensions: 8737
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)