BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC31ZH12RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1792 1356 0.0
>3x_Contig1792
Length = 28468
Score = 1356 bits (684), Expect = 0.0
Identities = 840/875 (96%), Gaps = 13/875 (1%)
Strand = Plus / Plus
Query: 48 cgaaatttactatcgcagtacattgattcaccaattttgagtattagattgccgtcctta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7302 cgaaatttactatcgcagtacattgattcaccaattttgagtattagattgccgtcctta 7361
Query: 108 gcgttcaattcaagaagaagatttgcatatgttgatttagtttctccagaagtggcaaag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7362 gcgttcaattcaagaagaagatttgcatatgttgatttagtttctccagaagtggcaaag 7421
Query: 168 aaagctacaaataggctcaatgggatagagatcaacaattataaattagtagcgaaaata 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7422 aaagctacaaataggctcaatgggatagagatcaacaattataaattagtagcgaaaata 7481
Query: 228 tcgaatgtcaacgaacgaactgaaaggactgacaatgccatatcggatggtagagagata 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7482 tcgaatgtcaacgaacgaactgaaaggactgacaatgccatatcggatggtagagagata 7541
Query: 288 atagttaagaaccttccagatgatattaccatcgatgatttgataaagatgttcaatgag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7542 atagttaagaaccttccagatgatattaccatcgatgatttgataaagatgttcaatgag 7601
Query: 348 tttggtgatacagaaaaagctagaatagtaactggtgatgaaacaaaccctggacgacat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7602 tttggtgatacagaaaaagctagaatagtaactggtgatgaaacaaaccctggacgacat 7661
Query: 408 tccagatatgcgttcataacattcaaaaacaaagcgagtgcagataatgctttgtcatta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7662 tccagatatgcgttcataacattcaaaaacaaagcgagtgcagataatgctttgtcatta 7721
Query: 468 aatggagcggtaatgaacggtaagccattacacgtttcaaaagttatgagaaaggcttat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7722 aatggagcggtaatgaacggtaagccattacacgtttcaaaagttatgagaaaggcttat 7781
Query: 528 ctagaaagacaagatgtgaagcgtctgcttgcttccagaaaagataacccaaaagttgtc 587
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 7782 ctagaaagacaagaggtgaagcgtctgcttgcttccagaaaagaaaacccaaaagttgtc 7841
Query: 588 ggaatatacccattgtctgatcagattaccccagatcaaattcttgctttcattacggag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7842 ggaatatacccattgtctgatcagattaccccagatcaaattcttgctttcattacggag 7901
Query: 648 atagctcaaattagacctccggatattacgaaagttttgctggtctctgatcatgaaggg 707
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 7902 aaagctcaaattagacctccggatattacgaaggttttgctggtctctgatcatgaa-gg 7960
Query: 708 tgcttt-ataatagcggacaaagaatgcattaccgcaaaagttttcacttggcatcaatt 766
|||||| |||||||||||||||||| ||||||||||||| ||||||||| ||||| |
Sbjct: 7961 tgctttaataatagcggacaaagaagcaattaccgcaaaag-tttcacttgcaatcaa-t 8018
Query: 767 ggataccaggttcaagatccggatttttggaatgtggtttctgctcatgaaactttcctt 826
||||| || |||||||| || || ||||| ||||| ||||||||||||| |||||||| |
Sbjct: 8019 ggata-caagttcaagaacc-gaattttgaaatgt-gtttctgctcatg-aactttccct 8074
Query: 827 tca-tatcncaatggacacaaaacaaccttgaatcatcc-aagcccgctggtgtaaa-ga 883
||| |||| ||||| ||||||||||||||||||||| || |||| ||||| |||||| ||
Sbjct: 8075 tcattatcccaatgaacacaaaacaaccttgaatcaaccaaagcacgctgttgtaaagga 8134
Query: 884 aatttaatc-cagcaggcgtaac-aaatgacaaaa 916
|||| |||| ||||| |||| || |||||||||||
Sbjct: 8135 aattaaatcacagcaagcgtcacaaaatgacaaaa 8169
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7405
Number of Sequences: 1807
Number of extensions: 7405
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)