BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA02FM1.SCF screened BAC_end
(798 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 494 e-139
>3x_Contig1698
Length = 21001
Score = 494 bits (249), Expect = e-139
Identities = 280/285 (98%), Gaps = 4/285 (1%)
Strand = Plus / Minus
Query: 86 ttaagattgagattgtcgacgtgactaaattagcttcatctattatcggaaaagaagcat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12669 ttaagattgagattgtcgacgtgactaaattagcttcatctattatcggaaaagaagcat 12610
Query: 146 tttttatagagtcttgtatgagaattaaagggttgacaaactctctatccaaccagtact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12609 tttttatagagtcttgtatgagaattaaagggttgacaaactctctatccaaccagtact 12550
Query: 206 cagagattccggatccaactaccaagattataattgcgacgcatttgcagaaggaaacag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12549 cagagattccggatccaactaccaagattataattgcgacgcatttgcagaaggaaacag 12490
Query: 266 atagagaagct-ttatggaagcaataaacatagctatgggaaaacttgaacagcgcttca 324
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 12489 atagagaagctattatggaagcaataaacatagctat-ggaaaacttgaacagcgcttca 12431
Query: 325 ggttataaattgtcagcatcctttggccttggttacccactcacc 369
||||||||||||||||||||| |||||||| |||| |||||||||
Sbjct: 12430 ggttataaattgtcagcatcc-ttggcctt-gttaaccactcacc 12388
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,131
Number of Sequences: 1807
Number of extensions: 15131
Number of successful extensions: 201
Number of sequences better than 1.0e-20: 1
length of query: 798
length of database: 10,358,551
effective HSP length: 16
effective length of query: 782
effective length of database: 10,329,639
effective search space: 8077777698
effective search space used: 8077777698
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)