BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA02RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1362 1130 0.0
>3x_Contig1362
Length = 8864
Score = 1130 bits (570), Expect = 0.0
Identities = 620/633 (97%), Gaps = 3/633 (0%)
Strand = Plus / Plus
Query: 42 tacgcttctgatactttcttggtaaagttttggaattggggttggtttggaaggatcgat 101
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tacgcttctgatacaaacttggtaaagttttggaattggggttggtttggaaggatcgat 638
Query: 102 taagttatcagcacaagcatcattgtatttctcggcgaaccatttcaaagatgattttaa 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 taagttatcagcacaagcatcattgtatttctcggcgaaccatttcaaagatgattttaa 698
Query: 162 gtcaactctgttactattcaatagagattggaaatattgcttttctatttctacagtatt 221
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 699 gtcaactctgttactattcaatagagattggaaatattgcttttcgaaatctacagtatt 758
Query: 222 gctcaaaagcgctggtcttaagattctaatttggtgatttgcaatgtctaacttcattgc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gctcaaaagcgctggtcttaagattctaatttggtgatttgcaatgtctaacttcattgc 818
Query: 282 ttccagaatttgaaacaccaatctgagagcttccaccaaagtcgatattgagttattttc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 ttccagaatttgaaacaccaatctgagagcttccaccaaagtcgatattgagttattttc 878
Query: 342 ctctgcttttttgaactttgaggacattttgtctacccatggatctctcattggtgcgca 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ctctgcttttttgaactttgaggacattttgtctacccatggatctctcattggtgcgca 938
Query: 402 atggtgtttgaataattgtgataaccagtcactgaaatttgacattacaagtgatccctt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 atggtgtttgaataattgtgataaccagtcactgaaatttgacattacaagtgatccctt 998
Query: 462 taagagctcttgaatcaacaattcagtatccaaaacgtttgccacagtagatacttcttt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 taagagctcttgaatcaacaattcagtatccaaaacgtttgccacagtagatacttcttt 1058
Query: 522 ttgaggaactattgttacaagaacatctttcanagtattgaatagaggtactagtctaga 581
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1059 ttgaggaactattgttacaagaacatctttcaaagtattgaatagaggtactagtctaga 1118
Query: 582 tctgttttcgtcgaaaacatcaggccttttgtttgtaaacataaattttcattctcaaca 641
|||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||
Sbjct: 1119 tctgttttcgtcgaaaacatcaggcc-tttggttgtaaacataaa-tttcattctcaaca 1176
Query: 642 tcacttcagtaacttatcggcaatttggctctt 674
||||| |||| |||||||||||||||| |||||
Sbjct: 1177 tcactccagt-acttatcggcaatttgtctctt 1208
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8240
Number of Sequences: 1807
Number of extensions: 8240
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)