BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA03FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1584 0.0
>3x_Contig1426
Length = 8319
Score = 1584 bits (799), Expect = 0.0
Identities = 858/873 (98%), Gaps = 4/873 (0%)
Strand = Plus / Plus
Query: 88 catggagagaacaacaatgaactatactatttgtttggagtagtgttaggtcttgcaata 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 catggagagaacaacaatgaactatactatttgtttggagtagtgttaggtcttgcaata 1838
Query: 148 tataacagtactatattggacttacattttgcgagggccatgtacaagaaactatgcaat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 tataacagtactatattggacttacattttgcgagggccatgtacaagaaactatgcaat 1898
Query: 208 gagcggatcacttttgaagattatgaggagttgtaccctgagacagcaagaaatttaaag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1899 gagcggatcacttttgaagattatgaggagttgtaccctgagacagcaagaaatttaaag 1958
Query: 268 aaaatgttgagttattcggaactagattttagtgatatatttggattgtcgtttgagacc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1959 aaaatgttgagttattcggaactagattttagtgatatatttggattgtcgtttgagacc 2018
Query: 328 acgtattacgatgtagccagtggtatcaacgtcacgaaaccgttatgtgacggaggagaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2019 acgtattacgatgtagccagtggtatcaacgtcacgaaaccgttatgtgacggaggagaa 2078
Query: 388 tcaatcccagtaacctcggagaataagacagagtttgttgaaaggtgggtaaatttttat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2079 tcaatcccagtaacctcggagaataagacagagtttgttgaaaggtgggtaaatttttat 2138
Query: 448 atgaatgagggggtctcatcgagttttagtgcattccaatccgggtttacaagagtcatc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2139 atgaatgagggggtctcatcgagttttagtgcattccaatccgggtttacaagagtcatc 2198
Query: 508 ggggatggtttggctttcccgatgttcaaaagttgtgaagtagaaaggctcatctgtggc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2199 ggggatggtttggctttcccgatgttcaaaagttgtgaagtagaaaggctcatctgtggc 2258
Query: 568 agcatagaacaagacatggatttcgaacaacttcgcgctgtgacgaaataccaaggcgga 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2259 agcatagaacaagacatggatttcgaacaacttcgcgctgtgacgaaataccaaggcgga 2318
Query: 628 ttccataaccaaaccccggtagtggaatggctatgggaaatactaccacaattatcccat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2319 ttccataaccaaaccccggtagtggaatggctatgggaaatactaccacaattatcccat 2378
Query: 688 gaacagcaacgtcaatttcttcatttcgtgactgggagtgacagagttccagtgacggga 747
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2379 gaacagcaacgtcaatttctccatttcgtgactgggagtgacagagttccagtgacggga 2438
Query: 748 cttgcgacgctttcgttcaaggt-acccgcac-acgtccngatcacatgatcagttgccc 805
|||||||||||| |||||||||| |||||||| |||||| ||||||||||||||||||||
Sbjct: 2439 cttgcgacgcttccgttcaaggtaacccgcacaacgtccggatcacatgatcagttgccc 2498
Query: 806 actgcccatacctgttttcacgaactctgcttgtacgaatatgagtcacgtgatactctt 865
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2499 actgcccatacctgtttcaacgaactctgcttgtacgaatatgagtcacgtgatactctt 2558
Query: 866 cctctgcgattggtgactgccctccnaaatgtatga-ggttatgggtttaaataatgtca 924
| ||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||
Sbjct: 2559 cttctgcgattggtgactgccct-cgaaatgtatgagggttatgggtttaaataatgtca 2617
Query: 925 gcaacaaacatacatttattatatcactacaaa 957
|||||||||||||||| || |||||||||||
Sbjct: 2618 gcaacaaacatacattaatataatcactacaaa 2650
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5666
Number of Sequences: 1807
Number of extensions: 5666
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)