BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA03RM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1439 0.0
>3x_Contig1517
Length = 8289
Score = 1439 bits (726), Expect = 0.0
Identities = 882/914 (96%), Gaps = 16/914 (1%)
Strand = Plus / Plus
Query: 48 tgaatcatctttggacctgctcatgtatggcaattgagctatgttccatactcccccatt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5361 tgaatcatctttggacctgctcatgtatggcaattgagctatgttccatactcccccatt 5420
Query: 108 ttctaatgcttctttcgatactaaacaatccatcactgaatcttatcgcgatagtttgaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5421 ttctaatgcttctttcgatactaaacaatccatcactgaatcttatcgcgatagtttgaa 5480
Query: 168 ttcgacgatttccaataatagcgatgcaaagaaaccgaatgtcatgcttcaaactgccag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5481 ttcgacgatttccaataatagcgatgcaaagaaaccgaatgtcatgcttcaaactgccag 5540
Query: 228 cacatcggcacctccatcaccagaactaccaatagaatcttcagaatccaatgatgattt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5541 cacatcggcacctccatcaccagaactaccaatagaatcttcagaatccaatgatgattt 5600
Query: 288 gattcccattgctagtatacctgatgaattgatgaaattgattgatttgttcattgatga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5601 gattcccattgctagtatacctgatgaattgatgaaattgattgatttgttcattgatga 5660
Query: 348 tttgaaacagcctaaatattccaggcctttaatgattacacaattatctcagatattcca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5661 tttgaaacagcctaaatattccaggcctttaatgattacacaattatctcagatattcca 5720
Query: 408 aaggttttatgagagatttgatagatcttgccaacaacattttaatgcattagcctcgcc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5721 aaggttttatgagagatttgatagatcttgccaacaacattttaatgcattagcctcgcc 5780
Query: 468 tggaagtgtgaatgttatgctcaacgcgagagaaacgagaaatagtggattgagtagtat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5781 tggaagtgtgaatgttatgctcaacgcgagagaaacgagaaatagtggattgagtagtat 5840
Query: 528 cttcaacagatccagaagtagtagttttcgaaatagcagcataagaacaagaactagaac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5841 cttcaacagatccagaagtagtagttttcgaaatagcagcataagaacaagaactagaac 5900
Query: 588 taattctgaacagaattatcagcaattgttgactccagaagatatatcccatcaaattaa 647
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5901 taattctgaacagaattatcagcaattgttgactccagaagaaatatcccatcaaattaa 5960
Query: 648 gctgncagatggctaat-atatcaaaacggaccagattatggatttgtgtgaatgcgata 706
|||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5961 gctgcaaga-ggctaataatatcaaaacggaccagattatggatttgtgtgaatgcgaaa 6019
Query: 707 tattcaagaataatactgc-agttggcacttgtgtcccnaatcatncatcaagacaggcg 765
|||||||||| |||||||| |||||||||||||||||| |||||| || |||||||||||
Sbjct: 6020 tattcaagaa-aatactgcaagttggcacttgtgtcccaaatcatccaacaagacaggcg 6078
Query: 766 atatcgactagttcgaatgaatgggaaaatgac-agcctattttcgt-ataatcccggag 823
| |||||||||||||||||||| |||||||||| |||||| |||||| ||||| ||||||
Sbjct: 6079 aaatcgactagttcgaatgaat-ggaaaatgacaagccta-tttcgtaataat-ccggag 6135
Query: 824 tttattgagttttgataagaatgttgaatactaaattgnacacgatgaaagnagtttatg 883
||||||||| ||||||||| |||||||||||||||||| |||||||||||| || ||| |
Sbjct: 6136 tttattgag-tttgataag-atgttgaatactaaattgaacacgatgaaag-ag-ttaag 6191
Query: 884 catttcgcggattactggatttacccagcatttttagcggttagagttgaaacataaagg 943
|| ||||| || |||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 6192 cagttcgc-gaatacttgattta-ccagcatttttagc-gttagagttgaaacataaaga 6248
Query: 944 aggacttggtatgg 957
| |||||| |||||
Sbjct: 6249 aagacttgatatgg 6262
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7488
Number of Sequences: 1807
Number of extensions: 7488
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)