BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA04FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig922 1360 0.0
>3x_Contig922
Length = 4170
Score = 1360 bits (686), Expect = 0.0
Identities = 763/782 (97%), Gaps = 5/782 (0%)
Strand = Plus / Minus
Query: 86 cttcttcatccttgatttgttcagcataatagtctgggtattttctgaaacaattttgca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3600 cttcttcatccttgatttgttcagcataatagtctgggtattttctgaaacaattttgca 3541
Query: 146 tagtggagaacttctcaacacagttgataccctttggatcagcttcagagtagacaaaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3540 tagtggagaacttctcaacacagttgataccctttggatcagcttcagagtagacaaaac 3481
Query: 206 atgaaaaagcggacttaaactcttcaccgcaaggaccgtatgccataccacctaaacaag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3480 atgaaaaagcggacttaaactcttcaccgcaaggaccgtatgccataccacctaaacaag 3421
Query: 266 gacaatcccagttgatttcaccagtttctgggttgtatgcagtttgttgttcgttttttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3420 gacaatcccagttgatttcaccagtttctgggttgtatgcagtttgttgttcgttttttt 3361
Query: 326 tttcaccttgaacacctgcagccgcagcagccgcagtagcggactgttcagcagtgccac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3360 tttcaccttgaacacctgcagccgcagcagccgcagtagcggactgttcagcagtgccac 3301
Query: 386 cggagatagaccgaatttcagcttgctcttctgcttctgttatggtctcagcttcagcag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3300 cggagatagaccgaatttcagcttgctcttctgcttctgttatggtctcagcttcagcag 3241
Query: 446 gagatttttcatgcaaaacaacatccgattcaccttctgaaccgtcttttgaggcggttt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3240 gagatttttcatgcaaaacaacatccgattcaccttctgaaccgtcttttgaggcggttt 3181
Query: 506 ttacggcatctgggcttgtttgttgaatctcctttttgtcagcttcatcttctaaaacaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3180 ttacggcatctgggcttgtttgttgaatctcctttttgtcagcttcatcttctaaaacaa 3121
Query: 566 cacccttggcagtttttgagtcatcgaagctcaaagaggggagctttggtatcctcggaa 625
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3120 cacccttggcagtttttgagtcatcgaagctcaaaga-gggagctttggtatcctcggaa 3062
Query: 626 atgccagtaacaggttcattgttggcttct-tcactgccagctggttcggtagcttgttc 684
||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct: 3061 atgccagtaacaggttcattggtggcttctcgcactggcagctggttcggtagcttgttc 3002
Query: 685 attgacggattc-gcaactggctcaatggcagctggctcatctcctgattaggtggctgc 743
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3001 attgacggattcagcaactggctcaatggcagctggctcatctcctgataaggtggctgc 2942
Query: 744 taaggcctggtgtgtctcctcgcttatagtaatctcgttcttaagagtagtaactggctc 803
|||||||||||||||||||||||| |||||||||||||| | ||||||||||| ||||
Sbjct: 2941 taaggcctggtgtgtctcctcgctataagtaatctcgttctcaggagtagtaactcgctc 2882
Query: 804 agcacctttctgctgagcagaccccggagattcatcgggcttccttcgtaaggttcagaa 863
|||||||| || |||||||||| ||||||||||||| ||| |||||||| ||||||||||
Sbjct: 2881 agcaccttcctcctgagcagacaccggagattcatc-ggcatccttcgt-aggttcagaa 2824
Query: 864 at 865
||
Sbjct: 2823 at 2822
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6839
Number of Sequences: 1807
Number of extensions: 6839
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)