BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA04RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1455 0.0
>3x_Contig1803
Length = 52241
Score = 1455 bits (734), Expect = 0.0
Identities = 860/887 (96%), Gaps = 13/887 (1%)
Strand = Plus / Minus
Query: 44 gcttattatttagaactgcgaatataacctcataatctggaacattctgaacggaatgag 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48822 gcttattatttagaactgcgaatataacctcataatctggaacattctgaacggaatgag 48763
Query: 104 tgattaacggattaaggtgttctagcgagagttgtgaattgatgctccttttattattca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48762 tgattaacggattaaggtgttctagcgagagttgtgaattgatgctccttttattattca 48703
Query: 164 ctttctgttcttttcttgaaaagacacaaggtagaaacctgacgataattattaaagtcc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48702 ctttctgttcttttcttgaaaagacacaaggtagaaacctgacgataattattaaagtcc 48643
Query: 224 tttaccaactatagacagatgggtactctcacc-tcacctacggtttactgcaaattaga 282
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 48642 tttaccaactatagacagatgggtactctcaccctcacctacggtttactgcaaattaga 48583
Query: 283 gcattgtgcaagttcttcaacttcacttcatttataggatgctgttaaagacactatgac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48582 gcattgtgcaagttcttcaacttcacttcatttataggatgctgttaaagacactatgac 48523
Query: 343 gaactgatcatcaagataatggcaccgtacgcgatctaaccgtagttacgacaatagagg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48522 gaactgatcatcaagataatggcaccgtacgcgatctaaccgtagttacgacaatagagg 48463
Query: 403 tttgcgttgacactacggaatttacgttcctgtgacctcgtggtagatagttacactgat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48462 tttgcgttgacactacggaatttacgttcctgtgacctcgtggtagatagttacactgat 48403
Query: 463 gcagttcgcattaatacaaaaaatgtatcacggacgcagcaagaagtttgcaatagaatg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48402 gcagttcgcattaatacaaaaaatgtatcacggacgcagcaagaagtttgcaatagaatg 48343
Query: 523 ggaaaactcatgatgaaacgaacctcttataattctcttcatggttattttaggaatcaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48342 ggaaaactcatgatgaaacgaacctcttataattctcttcatggttattttaggaatcaa 48283
Query: 583 gtaaaacttgctctgcatcatgaccaacctcatccgccatattcttaagaaatgttgaac 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48282 gtaaaacttgctctgcatcatgaccaacctcatccgccatattcttaagaaatgttgaac 48223
Query: 643 aacagctatttggagtccatggtgctcaattccacgaatttattatcatacctccattgt 702
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48222 aacagcta-ttggagtccatggtgctcaattccacgaatttattatcatacctccattgt 48164
Query: 703 gagtgtgagcaacatattatgatcactagacattaatttattaataattattaacagttt 762
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 48163 gagtgtgagcaacatattatgatcactagacattaattatttaataattattaacag-tt 48105
Query: 763 tttaagtnaggntctttctttatgtcttctttttctaaattttggttccgaacattcttt 822
||||||| | |||||| |||||||||| ||||||||||||| ||| |||||| |||||
Sbjct: 48104 tttaagtggagttctttc-ttatgtcttc-ttttctaaatttt-gtttcgaaca-tcttt 48049
Query: 823 tctggtgatttaaccacaagctacacagttcttcggttaattccttattattcccttctg 882
||||||||||||| ||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct: 48048 tctggtgatttaa-cacaagctacacagt--ctcggttaatcccttattatt-ccttctg 47993
Query: 883 agggcttgttatttactttcatgccggaggttttatgcataaatttt 929
||||||||||||||| |||||| || | ||||||||||||||||
Sbjct: 47992 -tggcttgttatttactctcatgcgtgatg-tttatgcataaatttt 47948
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6618
Number of Sequences: 1807
Number of extensions: 6618
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)