BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA05FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1269 0.0
>3x_Contig1791
Length = 39945
Score = 1269 bits (640), Expect = 0.0
Identities = 793/833 (95%), Gaps = 10/833 (1%)
Strand = Plus / Minus
Query: 87 gccaaaactttttgattattggttaaataagaaactctcttcgatggaattggcttcgta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20232 gccaaaactttttgattattggttaaataagaaactctcttcgatggaattggcttcgta 20173
Query: 147 tcgattatattcacttggatttggttccagaccaaatacaagcttcaagagtttaacgta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20172 tcgattatattcacttggatttggttccagaccaaatacaagcttcaagagtttaacgta 20113
Query: 207 tatatcaagtctttcgttttgatatgagaccatttctattctttttattataccattgac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20112 tatatcaagtctttcgttttgatatgagaccatttctattctttttattataccattgac 20053
Query: 267 atgatcgattaagtttgatctagtctttgttgataagggtaccgtgtcaaggtatatgtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20052 atgatcgattaagtttgatctagtctttgttgataagggtaccgtgtcaaggtatatgtt 19993
Query: 327 aagctgtgagtgtagcgaataccatttcgacatattctgttcatggttacttttcagctt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19992 aagctgtgagtgtagcgaataccatttcgacatattctgttcatggttacttttcagctt 19933
Query: 387 tagtattttatcttctactgatgtccttctttgtaccacaaatgtattacgcagtccggc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19932 tagtattttatcttctactgatgtccttctttgtaccacaaatgtattacgcagtccggc 19873
Query: 447 gatttctatttcacatccatcgatgctgccggagaaataaatagagtttttccaggctaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19872 gatttctatttcacatccatcgatgctgccggagaaataaatagagtttttccaggctaa 19813
Query: 507 tgcctctgttctattcctaaacattatatcacgtttttggctttgattcacaatggataa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19812 tgcctctgttctattcctaaacattatatcacgtttttggctttgattcacaatggataa 19753
Query: 567 aacattggggtcagtattcttgttttccgttaagaataagttgttacaatatttcatttc 626
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 19752 aacattggggtcagtattcttgttttccgttaagaataggttgttacaatattccatttc 19693
Query: 627 gtacagcgaagaaagcggntgagataaatcaaatatgtaatttgaagtcttatttaattc 686
|||||||||||||||||| ||||||||||||| ||||||||||| |||||| |||||||
Sbjct: 19692 gtacagcgaagaaagcggttgagataaatcaataatgtaatttgaggtcttagttaattc 19633
Query: 687 atctagttcgatctttggatccagncaagacatgctat-taagaaaaattagaaaggagt 745
|||||||||||||||||||||||| || |||||||||| ||||||||| ||| | |||
Sbjct: 19632 atctagttcgatctttggatccagccaggacatgctatcaaagaaaaataggaaggaagt 19573
Query: 746 tgtcaattttcgcaaacttaatccttcaaatgattctttaccacatttcctaacagagag 805
||||| | ||||||||||| | |||| |||||||||||||||||||||||| ||||||
Sbjct: 19572 agtcaa-tatcgcaaacttagt-cttccaatgattctttaccacatttcctacaagagag 19515
Query: 806 aaactttttggaactgaactttcattttctatttcccccatcttgagatacttccaaata 865
|||||| | | |||| ||||||| ||||||||||||||||||| || ||||| ||||||
Sbjct: 19514 -aactttcttgtactg-actttca-tttctatttcccccatcttaag-tactttcaaata 19459
Query: 866 ccccttttggaaaaatcaaatttttcatcccaagatctcaaagttaatatctt 918
||||||||| || |||| | | ||||| |||||||||||||||| |||||||
Sbjct: 19458 ccccttttg--aagatcagaatcttcat-ccaagatctcaaagtttatatctt 19409
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7845
Number of Sequences: 1807
Number of extensions: 7845
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)