BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA05RM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1429 1292 0.0
>3x_Contig1429
Length = 8041
Score = 1292 bits (652), Expect = 0.0
Identities = 793/823 (96%), Gaps = 13/823 (1%)
Strand = Plus / Plus
Query: 49 agaatcagaaagatgatgatgatgacgaatatattagaaaagttcgtacagctgtagaac 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3759 agaatcagaaagatgatgatgatgacgaatatattagaaaagttcgtacagctgtagaac 3818
Query: 109 aattcgaaaaggcaggcttcttcgaggatttagacgatactaaaaagggttcaaaaacaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3819 aattcgaaaaggcaggcttcttcgaggatttagacgatactaaaaagggttcaaaaacaa 3878
Query: 169 aagccatggtatataagctagcagacgaggtgatagcccgacataaagacaaactcttac 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3879 aagccatggtatataagctagcagacgaggtgatagcccgacataaagacaaactcttac 3938
Query: 229 gcataagagacccaaattatgataagtgg-tctgaaccattaaaaacccccatgatagat 287
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3939 gcataagagacccaaattatgataagtgggtctgaaccattaaaaacccccatgatagat 3998
Query: 288 aaatatcatgaaatcaaagaagaatggagacgtgaggaaacgaaccacggttccagtagt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3999 aaatatcatgaaatcaaagaagaatggagacgtgaggaaacgaaccacggttccagtagt 4058
Query: 348 ttaaacaacagttcaatgactacacagaatgttacatttgcatggagttcaaatgctcat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4059 ttaaacaacagttcaatgactacacagaatgttacatttgcatggagttcaaatgctcat 4118
Query: 408 cgaccggagctgaccgcaccaaagaagcctttggaaccgcattccaataagaaatcaaca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4119 cgaccggagctgaccgcaccaaagaagcctttggaaccgcattccaataagaaatcaaca 4178
Query: 468 aatgaaatactacggagtaaagcaatgaaaagcgctcatgaattaagaagtaagcaaatt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4179 aatgaaatactacggagtaaagcaatgaaaagcgctcatgaattaagaagtaagcaaatt 4238
Query: 528 ctgctcaataaactgcgggataaaaatgatagaaacaatctgccttcacaggatggtgat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4239 ctgctcaataaactgcgggataaaaatgatagaaacaatctgccttcacaggatggtgat 4298
Query: 588 gatgtcaagccgaaattt-aaatggatcccttggaa-catttgtcgncaaagc-ttaccg 644
|||||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||||
Sbjct: 4299 gatgtcaagccgaaatttaaaatggatcccttggaaccatttgtcgccaaagctttaccg 4358
Query: 645 agagagaagaagatgcgaccaaaggagaataaggagaagc-aattttgtttttgggggat 703
||||||||||||| ||||||||||||||| ||||| ||| ||||||| |||| ||||||
Sbjct: 4359 agagagaagaagaagcgaccaaaggagaa-aaggaagagcaaattttggtttt-ggggat 4416
Query: 704 ccctttaccatcatactgacgaatgaatacacagagaccaagctaggtcgccagagcttg 763
||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||
Sbjct: 4417 cccttacccatcatactgacgaaggaaaccacagagacaaagctaggtcgccagagcttg 4476
Query: 764 aaga-tataaaattggtgttggatcacccgaattcgc-gtcccccacgttattcgatt-c 820
|||| |||||||||||||||| |||| |||||||||| ||||||||||||| |||||| |
Sbjct: 4477 aagattataaaattggtgttgtatca-ccgaattcgcggtcccccacgtta-tcgattcc 4534
Query: 821 tttctttggatcccgattaccctcagacttttaccaattacgc 863
||||| | ||||||||| || |||||||| |||||||| ||||
Sbjct: 4535 tttctct-gatcccgataacactcagactattaccaataacgc 4576
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7293
Number of Sequences: 1807
Number of extensions: 7293
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)