BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA06FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1419 0.0
>3x_Contig1780
Length = 27883
Score = 1419 bits (716), Expect = 0.0
Identities = 840/875 (96%), Gaps = 7/875 (0%)
Strand = Plus / Minus
Query: 87 tgatccaaacatcccagaaccagatagaaaagagtacaatatgatactaactaatgaatc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19528 tgatccaaacatcccagaaccagatagaaaagagtacaatatgatactaactaatgaatc 19469
Query: 147 ggaaaatgacatcaagaagccgaccgataatcaatcgacattagacccgccttccttttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19468 ggaaaatgacatcaagaagccgaccgataatcaatcgacattagacccgccttccttttc 19409
Query: 207 tacgattccaccaaccgtggttcatttagacaagatagaagatcaagaattaagaaacaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19408 tacgattccaccaaccgtggttcatttagacaagatagaagatcaagaattaagaaacaa 19349
Query: 267 tattgaagaacttgctaggaaaaaatggcccaaatttttcacagctcatcggacgacaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19348 tattgaagaacttgctaggaaaaaatggcccaaatttttcacagctcatcggacgacaat 19289
Query: 327 agacttgaagcctggtgaaatgctattccttcctaccggatggtttcatgaagtcacttc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19288 agacttgaagcctggtgaaatgctattccttcctaccggatggtttcatgaagtcacttc 19229
Query: 387 ttttgggtcaacagacggtaataaagacagccatgatattcatgtagctgtaaattactg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19228 ttttgggtcaacagacggtaataaagacagccatgatattcatgtagctgtaaattactg 19169
Query: 447 gcttatgccaccaactggaaattccattaacaacatgtataaggatggctactggaacag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19168 gcttatgccaccaactggaaattccattaacaacatgtataaggatggctactggaacag 19109
Query: 507 ttacatggacagcatctcgaatgccttgcaacgcgtaagacaaaaatcggacagacttta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19108 ttacatggacagcatctcgaatgccttgcaacgcgtaagacaaaaatcggacagacttta 19049
Query: 567 aacaaggcacgaagcggcaccctcttgtgactgttttccagataaggaaatttgttcttt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19048 aacaaggcacgaagcggcaccctcttgtgactgttttccagataaggaaatttgttcttt 18989
Query: 627 ttgttatcgaaattcctgcgaaaatccccaactaagatgactccatcgcatgtgatgtat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18988 ttgttatcgaaattcctgcgaaaatccccaactaagatgactccatcgcatgtgatgtat 18929
Query: 687 gggtngttaacntaaatccttccttgactgntttctatgaatagntaatatgcacgcata 746
|||| |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 18928 gggt-gttaacttaaatccttccttgacttgtttctatgaatagttaatatgcacgcata 18870
Query: 747 tgatgaatatctaagcaaacttaaagt-agtactgggtaattaaga-atcatgcactcac 804
|||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||
Sbjct: 18869 tgatgaatatctaagcaaactttaagtaagtactggtaaattaagatatcatgcactcac 18810
Query: 805 tcagaataaantgctgctgaataaaaggnncttgttncataatattttnctgatcggaac 864
||| ||||| |||||||||||| |||| | || |||| |||||| |||||||||||
Sbjct: 18809 tcaagataaattgctgctgaatagaaggtcttgtttccatattatttt-ctgatcggaac 18751
Query: 865 ccacgcanaatctnctttttttttttttttggacaatcggaaaatttatatcgttcttcg 924
||||||| ||||| |||||||||||||||| ||||||| |||||| || |||||||| |
Sbjct: 18750 ccacgcagaatctccttttttttttttttt-gacaatctgaaaatcta-atcgttctctg 18693
Query: 925 cg-gattcgtcacttattccatttaattcatattc 958
|| ||||||||||||| | |||||| ||||||||
Sbjct: 18692 cgtaattcgtcacttatccgatttaagtcatattc 18658
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,731
Number of Sequences: 1807
Number of extensions: 14731
Number of successful extensions: 2197
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)