BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA06RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1330 0.0
>3x_Contig1669
Length = 15503
Score = 1330 bits (671), Expect = 0.0
Identities = 805/839 (95%), Gaps = 9/839 (1%)
Strand = Plus / Minus
Query: 44 cttcgatgtagttcgattccattatagagctatcgttagatttttctaagtcatcatgat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420 cttcgatgtagttcgattccattatagagctatcgttagatttttctaagtcatcatgat 9361
Query: 104 aagtatacggtaacttgaaaggccaatgaccagatctttgaaaatactctagagcaacca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9360 aagtatacggtaacttgaaaggccaatgaccagatctttgaaaatactctagagcaacca 9301
Query: 164 tgattacgtatcctagaccttgccatgccgcacaagaaataaacaacggttttaaattgg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9300 tgattacgtatcctagaccttgccatgccgcacaagaaataaacaacggttttaaattgg 9241
Query: 224 tcgcaccaatatgggatatataaaccgggaactggtctgtatgcatgaaccaataaatgg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9240 tcgcaccaatatgggatatataaaccgggaactggtctgtatgcatgaaccaataaatgg 9181
Query: 284 gatgaccttgtcctgcccaacatgccaacatcgcaattagcatcccataccatggaatga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9180 gatgaccttgtcctgcccaacatgccaacatcgcaattagcatcccataccatggaatga 9121
Query: 344 aagctatccagggaaagataaaccagtagttacctggacgtggaaacatattagtatagt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9120 aagctatccagggaaagataaaccagtagttacctggacgtggaaacatattagtatagt 9061
Query: 404 cttgcggtttacgtttatacctgtatcaaatccaatccttatgagaatgtctaccagtga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9060 cttgcggtttacgtttatacctgtatcaaatccaatccttatgagaatgtctaccagtga 9001
Query: 464 tattctttaaaggaatgagctatgttgaccttgtcccgtcaaattcggctggtataatat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9000 tattctttaaaggaatgagctatgttgaccttgtcccgtcaaattcggctggtataatat 8941
Query: 524 actcattcttttccttatatatctaanacccgacttccacgaaatanaaac-atataaac 582
|||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||
Sbjct: 8940 actcattcttttccttatatatctaaaacccgacttccacgaataaaaaacaatataaac 8881
Query: 583 tatatttgacatatttatatatatatggctttatatggcatggcttgtgtatggcactgc 642
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 8880 tatatttgacatatttatatatatatgcttttatatggcatggcttgtgtatggcactgc 8821
Query: 643 antgatgctgtcactgatgccctaaa-tatcactngctattcactgaaaggtaactgtca 701
| ||||||||||||||||||| |||| || ||| ||||||||||| || |||||||||
Sbjct: 8820 agtgatgctgtcactgatgccttaaattacaacttgctattcactg-aatgtaactgtc- 8763
Query: 702 aatcggctcgatgattcactagcttggagacaccctgcgcgaattcttgggcgctttgtt 761
||||||||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||
Sbjct: 8762 aatcggctcgatgatacactagctt-gagacaccctgcgcgatttc-tgggcgctttgtt 8705
Query: 762 gcgatatttgctccagtaaaaaaaaaagggttttctttcgaggcttttactattaagttt 821
||||||||||||||||||||||||||| ||||||||||||| || ||||||| | || ||
Sbjct: 8704 gcgatatttgctccagtaaaaaaaaaa-ggttttctttcgatgc-tttactaat-aggtt 8648
Query: 822 tcgaggcttaaagacaaggatggattacgtaatggatgattttaatttttccactccga 880
||||||||||| ||||||||||| |||||||||||||| | | |||||||||||||
Sbjct: 8647 tcgaggcttaagagcaaggatggataacgtaatggatgatatctaattttccactccga 8589
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9426
Number of Sequences: 1807
Number of extensions: 9426
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)