BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA07FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1589 1269 0.0
>3x_Contig1589
Length = 10239
Score = 1269 bits (640), Expect = 0.0
Identities = 735/758 (96%), Gaps = 7/758 (0%)
Strand = Plus / Plus
Query: 86 ataaggatgctggaattatcactcacatcggtgccgctttctccagagatcaacctgaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6596 ataaggatgctggaattatcactcacatcggtgccgctttctccagagatcaacctgaaa 6655
Query: 146 agatttacatccaagatcgtatcaaagaaaacttgccagagttgaagactgcaatgattg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6656 agatttacatccaagatcgtatcaaagaaaacttgccagagttgaagactgcaatgattg 6715
Query: 206 acaatgaaggttccttctacttatgtggtccaacgtggcctgttcctgatatcactcaag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6716 acaatgaaggttccttctacttatgtggtccaacgtggcctgttcctgatatcactcaag 6775
Query: 266 ctctacaagatattattgctgcagatgcgaaggagaagggcatcaacgttgacttggatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6776 ctctacaagatattattgctgcagatgcgaaggagaagggcatcaacgttgacttggatg 6835
Query: 326 ctgccattgaagacttaaaggaaacttctagatatatcctagaagtttactgattttttt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6836 ctgccattgaagacttaaaggaaacttctagatatatcctagaagtttactgattttttt 6895
Query: 386 atgtgtttcgttgaatactgtttattatttatcaatctatttattttggtatatgagaat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6896 atgtgtttcgttgaatactgtttattatttatcaatctatttattttggtatatgagaat 6955
Query: 446 cattacataacactaactactgatgtaccatcttggaacctagttctaaacacccggtta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6956 cattacataacactaactactgatgtaccatcttggaacctagttctaaacacccggtta 7015
Query: 506 gcgttagtgaacataccttctttcaacgatacaacgataaattgggagcctttaaacctg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7016 gcgttagtgaacataccttctttcaacgatacaacgataaattgggagcctttaaacctg 7075
Query: 566 gttttaataagatgaccaatgttctgagtatgacttanatctaatgcggcatccacttca 625
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7076 gttttaataagatgaccaatgttctgagtatgacttaaatctaatgcggcatccacttca 7135
Query: 626 tccaatatatacattggtgcaggtttgaactgcaacaatgcaaggattcattgat-acgc 684
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct: 7136 tccaatatatacattggtgcaggtttgaactgcaacaatgcaagga-tcaatgataacgc 7194
Query: 685 aattagggaacgctgtccancagagaattctaccagactctcttttcaaatttaactaaa 744
||||||||||||||||||| |||||| |||||||||||||||||| ||||||| || ||
Sbjct: 7195 aattagggaacgctgtccaccagagagttctaccagactctctttccaaattttacctaa 7254
Query: 745 tttaactttaacttcttaatcctcggttaacatc-ttaccttctgaaaggtcccattttg 803
|||||||||||||||| | |||||||| ||||| |||||||||| ||||| ||| ||||
Sbjct: 7255 tttaactttaacttctaatccctcggtt-acatctttaccttctg-aaggttccaatttg 7312
Query: 804 gcgaatgtatttcgggagnaataacgccaaaaatattt 841
||||||| | |||||||| || | ||||||||||||||
Sbjct: 7313 gcgaatg-aattcgggag-aagatcgccaaaaatattt 7348
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7040
Number of Sequences: 1807
Number of extensions: 7040
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)