BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA07RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1528 1532 0.0
>3x_Contig1528
Length = 10737
Score = 1532 bits (773), Expect = 0.0
Identities = 857/879 (97%), Gaps = 5/879 (0%)
Strand = Plus / Minus
Query: 39 aggtagtcatttgttgctactggtacgaggccatgttctctagctttctgtttaattgtt 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2116 aggtagtcatttgttgctactggtacgaggccatgttctctagctttctgtttaattgtt 2057
Query: 99 tctgttgagattattggagctggcgcgatcaattgagtagattttttaacaagttgagaa 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2056 tctgttgagattattggagctggcgcgatcaattgagtagattttttaacaagttgagaa 1997
Query: 159 tgttcagcttcagttaaaactattaagccatacttcttcgcactctcacgaatagaatct 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1996 tgttcagcttcagttaaaactattaagccatacttcttcgcactctcacgaatagaatct 1937
Query: 219 ggtgttaacctctctgaagtgataagtttctccatctctataaattcctcagttggcacc 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1936 ggtgttaacctctctgaagtgataagtttctccatctctataaattcctcagttggcacc 1877
Query: 279 acagataatccgaattgcggtgcagcagagtaaatgatatcctttgtcaaatcttcaggt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1876 acagataatccgaattgcggtgcagcagagtaaatgatatcctttgtcaaatcttcaggt 1817
Query: 339 gtcaatgatgtagagtaatgattttgatgacaatcgatatccttttcaataaggttgtaa 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1816 gtcaatgatgtagagtaatgattttgatgacaatcgatatccttttcaataaggttgtaa 1757
Query: 399 cctaaaacttctgcatgtctttgcaagtcctccaatgtcggttcattatcttttatcgtt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1756 cctaaaacttctgcatgtctttgcaagtcctccaatgtcggttcattatcttttatcgtt 1697
Query: 459 gatgccagtgaaacattatcattatcagaaccaaggaaatcattggcatcggtataatga 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1696 gatgccagtgaaacattatcattatcagaaccaaggaaatcattggcatcggtataatga 1637
Query: 519 gtggaagatgtatgcatgcttgacttcgaagggctgtttctgaggttgaaggagctgcta 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1636 gtggaagatgtatgcatgcttgacttcgaagggctgtttctgaggttgaaggagctgcta 1577
Query: 579 ctntgtagcgcatcataatattcagtgtcacctgtgcttacagaattgaaactaacagtg 638
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1576 ctttgtagcgcatcataataatcagtgtcacctgtgcttacagaattgaaactaacagtg 1517
Query: 639 gaatggttcacagagggatggagatttaatgcangcctagagccataatcgccgacacgt 698
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1516 gaatggttcacagagggatggagatttaatgcaggcctagagccataatcgccgacacgt 1457
Query: 699 tgattattatgtttctcgagttcttcatctgtgaaa-taacagggaccaacttcaaagca 757
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1456 tgattattatgtttctcgagttcttcatctgtgaaattaacagggaccaacttcaaagca 1397
Query: 758 aaacgtgaagcatacaactgtaaatcggcatatgtgatattatcactattgcgcctttct 817
||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct: 1396 aaacgtgaagcatacaactgtaaatcgtcatatgtaatattatcacta-tgcgcctttct 1338
Query: 818 ttggaaataggttataatattcttcggaggggaggacagtgagatcaaagcttttggccc 877
|| | |||| ||||| ||||||||||||||| || ||||||||||||||| ||| ||||
Sbjct: 1337 tt-gtaataagttattatattcttcggagggaagaacagtgagatcaaaggcttttgccc 1279
Query: 878 cataat-aatatccggcctttgttaattcgggcctttgt 915
||| || ||||||| | ||||||||||||| || |||||
Sbjct: 1278 cattataaatatcc-gtctttgttaattcgtgcttttgt 1241
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6737
Number of Sequences: 1807
Number of extensions: 6737
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)