BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA08FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig869 1277 0.0
>3x_Contig869
Length = 2873
Score = 1277 bits (644), Expect = 0.0
Identities = 691/704 (98%), Gaps = 2/704 (0%)
Strand = Plus / Plus
Query: 86 atccattatactactactgcctctactctcacattacatcttcccagggcatcagtttca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2045 atccattatactactactgcctctactctcacattacatcttcccagggcatcagtttca 2104
Query: 146 acggcaacgggtcatgggacttgctgtccattgggacagcaagttccgcagcacatgcga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2105 acggcaacgggtcatgggacttgctgtccattgggacagcaagttccgcagcacatgcga 2164
Query: 206 tctttgcgaacaaagatgtcactgatgcatcatctggcactctcagtaggaactgctccc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2165 tctttgcgaacaaagatgtcactgatgcatcatctggcactctcagtaggaactgctccc 2224
Query: 266 tctcgcatcttattctaagacatctcgacatgtctgtgttaagaccgatgcgacaatctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2225 tctcgcatcttattctaagacatctcgacatgtctgtgttaagaccgatgcgacaatctt 2284
Query: 326 gtaacgaatacttcttgatgggatcccggttccattgtatcaagtttaacgatttgtcct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2285 gtaacgaatacttcttgatgggatcccggttccattgtatcaagtttaacgatttgtcct 2344
Query: 386 tttctaaatataacccttttgccgtacatagtactatatggtctctttggttcggaactt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2345 tttctaaatataacccttttgccgtacatagtactatatggtctctttggttcggaactt 2404
Query: 446 gggtagattgaaccaattgatcgtgacagagttgatggtttgaagtagctttgtactgtt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2405 gggtagattgaaccaattgatcgtgacagagttgatggtttgaagtagctttgtactgtt 2464
Query: 506 tgtattccaattcgtccagtttagagtaccatttgttaatgagtttttcatcatgagaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2465 tgtattccaattcgtccagtttagagtaccatttgttaatgagtttttcatcatgagaat 2524
Query: 566 ggatcaaaggtcgaattaacagttgggtagagttgatttcgacacagtgtggagtccagc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2525 ggatcaaaggtcgaattaacagttgggtagagttgatttcgacacagtgtggagtccagc 2584
Query: 626 ggtgggagtgttcgaattgtgtttgcagtaggaaagagatctgcaacgaaagggtgttag 685
|||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |
Sbjct: 2585 ggtgggagtgttcgaattgtgtttgcagtaggaaggagatctgaaacgaaggggtgtagg 2644
Query: 686 gtggcagcggttccatggttggtgtttgatgttgctgatctgccgttgggcaagtgcagc 745
|||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||
Sbjct: 2645 gtggcagcggttccatggttggtgtttgatgttgctgatctg-cgtttggcaggtgcagc 2703
Query: 746 atgggataggacatgggtaaataccagctatggatctatatctg 789
|||||| |||| |||||||| ||| ||||||| |||||||||||
Sbjct: 2704 atgggagagga-atgggtaagtacgagctatgtatctatatctg 2746
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5560
Number of Sequences: 1807
Number of extensions: 5560
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)