BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA08RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1760 1195 0.0
>3x_Contig1760
Length = 27266
Score = 1195 bits (603), Expect = 0.0
Identities = 629/635 (99%), Gaps = 2/635 (0%)
Strand = Plus / Plus
Query: 53 taagagtagagaaaaagtaacagcaaagataaggaggctaagaatgataagattaagctg 112
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3050 taagagtagagaaaaag-aacagcaaagataaggaggctaagaatgataagattaagctg 3108
Query: 113 aaattccatggtacacggataaaagatgattcaacgatggtcgatttaattcaagagaca 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3109 aaattccatggtacacggataaaagatgattcaacgatggtcgatttaattcaagagaca 3168
Query: 173 agcaagaaaaaggaaagagacaacgcctttggtacaacaggtaacgatgtatcacagggg 232
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3169 agcaagaaaaaggaaagagacaacgcctttggtacaacaggtaacgatgtagcacagggg 3228
Query: 233 actaaagtgaagtatgaaacggaaaagattgactatacttataagtttcagtttatcggt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3229 actaaagtgaagtatgaaacggaaaagattgactatacttataagtttcagtttatcggt 3288
Query: 293 gcggatcagagaatattcaaaaataacgtatcaaaattgacaaggcttttcatgaaggag 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3289 gcggatcagagaatattcaaaaataacgtatcaaaattgacaaggcttttcatgaaggag 3348
Query: 353 tttatgaaggtaaggaatgtcaggcttgcatcggatttcaaagaaaactacctacctctt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3349 tttatgaaggtaaggaatgtcaggcttgcatcggatttcaaagaaaactacctacctctt 3408
Query: 413 tacatttacgtagatcattccacacaatcacgaagtatgttcaaaaggtatctacggagg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3409 tacatttacgtagatcattccacacaatcacgaagtatgttcaaaaggtatctacggagg 3468
Query: 473 aagataatagattacattagaccacttctaatgacactatcacatagttatgaaacgaag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3469 aagataatagattacattagaccacttctaatgacactatcacatagttatgaaacgaag 3528
Query: 533 gagcaaggtagaaagttcgaaagaagaatcatgttaaaagtagattcaattgtcaatacg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3529 gagcaaggtagaaagttcgaaagaagaatcatgttaaaagtagattcaattgtcaatacg 3588
Query: 593 ctttcgggatatttaccatcagtttacttcaaatcagaagaaggggattgtctgctattg 652
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3589 ctttcggaatatttaccatcagtttacttcaaatcagaagaagtggattgtctgctattg 3648
Query: 653 cctattcccgtatcttgcgtttggaaggatgcatt 687
|||| ||||||||| ||||||||||||||||||||
Sbjct: 3649 cctagtcccgtatc-tgcgtttggaaggatgcatt 3682
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7644
Number of Sequences: 1807
Number of extensions: 7644
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)