BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA09FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1245 1243 0.0
>3x_Contig1245
Length = 6017
Score = 1243 bits (627), Expect = 0.0
Identities = 753/781 (96%), Gaps = 11/781 (1%)
Strand = Plus / Plus
Query: 87 cttttgagcagtatgcaacggctatagacgtggtagtagcacaaatcggaatcttatttt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4463 cttttgagcagtatgcaacggctatagacgtggtagtagcacaaatcggaatcttatttt 4522
Query: 147 ttcatgcaagaagccaaacgaaaaagtgggacatatgcagtcgaatgaccaacaaaaaca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4523 ttcatgcaagaagccaaacgaaaaagtgggacatatgcagtcgaatgaccaacaaaaaca 4582
Query: 207 cggaaaccagaaagaggaacaaacagaccatataaggcaaggtgagagacaatcgattac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4583 cggaaaccagaaagaggaacaaacagaccatataaggcaaggtgagagacaatcgattac 4642
Query: 267 ataataagcgttcacgtgtgtagagaatttcaaaggtacaacagaaatgaccaatagtgc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4643 ataataagcgttcacgtgtgtagagaatttcaaaggtacaacagaaatgaccaatagtgc 4702
Query: 327 tccaaacttgttctaaacgaaaagacgtttcaaacgatctgaccatagaaaagaagttca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4703 tccaaacttgttctaaacgaaaagacgtttcaaacgatctgaccatagaaaagaagttca 4762
Query: 387 agtggcgactattctcccacaacttcaggtacctccggacagaagttggtaaaaaattgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4763 agtggcgactattctcccacaacttcaggtacctccggacagaagttggtaaaaaattgt 4822
Query: 447 cagctatctgcaatgaacgatcatagtgagatttcgtagtagcacgcactagtatgtgtt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823 cagctatctgcaatgaacgatcatagtgagatttcgtagtagcacgcactagtatgtgtt 4882
Query: 507 cttcttttttttgctgttggtaccaacggaatatacactctttccgggtataccacttca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4883 cttcttttttttgctgttggtaccaacggaatatacactctttccgggtataccacttca 4942
Query: 567 cggtttcgccctacggttcccttgacatttggatttaccctaactnncgaagttgtgatg 626
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4943 cggtttcgccctacggttcccttgacatttggatttaccctaactccggaagttgtgatg 5002
Query: 627 tgaattatgatagcgcctttcggc-tacattctgtcatcatgctggtaatactagcaatn 685
||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 5003 tgaattatgatagcgcc-ttcggcttacatcctgtcatcatgctggtaatactagcaat- 5060
Query: 686 gctttcttcttttttttcttgaagagcccatgatgacccccgtgc-acgcgtacattttt 744
|||| ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||
Sbjct: 5061 gcttccttcttttttttcttgaagagccattgatga-ccccgtgcaacgcgtacattttt 5119
Query: 745 tatgg-aaatttaaagatggaaattc-gaatgttattcgtgcatgattaaacaatg-tta 801
||||| ||||| ||||||||||| || |||||| || |||||||||||| ||||| | |
Sbjct: 5120 tatggaaaattaaaagatggaaaatcggaatgtaatcggtgcatgattaagcaatgataa 5179
Query: 802 tgagctac-gctttg-accaagaaaga-ggttcaagatgatggatttgcgtgtacgttac 858
|||||||| || ||| || |||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 5180 tgagctacagcattgaacaaagaaagagggttcaagaagatggatttgcgtgtacgttac 5239
Query: 859 g 859
|
Sbjct: 5240 g 5240
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7145
Number of Sequences: 1807
Number of extensions: 7145
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)