BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA09RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig788 476 e-134
3x_Contig1677 456 e-128
>3x_Contig788
Length = 2349
Score = 476 bits (240), Expect = e-134
Identities = 255/260 (98%)
Strand = Plus / Minus
Query: 42 cttgtggcaaaggacatcgagacttcgtacgagccaccaatcgctgtcggtgtcggtgat 101
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 262 cttgtggcaaaggacatcgagacgccgtacgagccaccaatcgctgtcggtgtcggtgat 203
Query: 102 tcctctttgttcgaccaatatccggaagagcaactggactatggcgttcagggcgaagat 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tcctctttgttcgaccaatatccggaagagcaactggactatggcgttcagggcgaagat 143
Query: 162 ccatacggccaatactttttagatttctaacgaaatcttcaaagaaaaacatattttata 221
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 142 ccatacggccaatactttttagatttctaacgaaatcttcaaagaaaaacataactcata 83
Query: 222 atcgattcatttttgaacggatcgttcgtgaaactacctcttctttttactttgttatgt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 atcgattcatttttgaacggatcgttcgtgaaactacctcttctttttactttgttatgt 23
Query: 282 cggtcggattgcgtttatat 301
||||||||||||||||||||
Sbjct: 22 cggtcggattgcgtttatat 3
>3x_Contig1677
Length = 15081
Score = 456 bits (230), Expect = e-128
Identities = 367/405 (90%), Gaps = 6/405 (1%)
Strand = Plus / Minus
Query: 324 tttatattaatatatttttggttattattatgtacaggaaaatgagaagagaactcgttt 383
||||||||||||||||| |||||| || ||||||||| |||| |||||||||||||||
Sbjct: 15076 tttatattaatatatttcccgttattcttctgtacaggacaatgtgaagagaactcgttt 15017
Query: 384 tgacatggggaatttacatgcgtgaggtgttcgacgtatctgtctattccaagacaatct 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15016 tgacatggggaatttacatgcgtgaggtgttcgacgtatctgtctattccaagacaatct 14957
Query: 444 tggcacctagcccttccaatgcagccttaaccttgtcagcgtcttccttagcgacgtttt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14956 tggcacctagcccttccaatgcagccttaaccttgtcagcgtcttccttagcgacgtttt 14897
Query: 504 ccttc-aaacctttggagcactttccacatactttttttgcttc-accaatgacaaaccc 561
||||| ||||||||||||||||||||||| || || || ||||| |||||||||||| ||
Sbjct: 14896 ccttcaaaacctttggagcactttccacaaac-ttcttagcttcaaccaatgacaaa-cc 14839
Query: 562 taac-aggtcttaacttctttgatgatcttaagcttagacttggcatcaaacgattctta 620
|||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 14838 taacaagttcttaacttctttgatgatcttaggcttagacttggcatcaaacgattctaa 14779
Query: 621 cctgatgaagaaaaaagtc-tctttttcacgaactcttcttccttggcttttttagctgg 679
| ||||| |||||| |||| ||| || |||| |||||||||||||||| || ||||||
Sbjct: 14778 cttgatggagaaaatagtcttctcttcaacgacttcttcttccttggcttcttcagctgg 14719
Query: 680 agcanttggggcagtttgaccaaaaccagctgttgggaacaaaat 724
|||| |||||||| | |||| |||||||| ||||||| ||||
Sbjct: 14718 agcagctggggcagctgaaccagcaccagctgctgggaacgaaat 14674
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,770
Number of Sequences: 1807
Number of extensions: 18770
Number of successful extensions: 258
Number of sequences better than 1.0e-20: 2
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)