BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA10FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1224 1170 0.0
3x_Contig34 159 1e-38
>3x_Contig1224
Length = 5948
Score = 1170 bits (590), Expect = 0.0
Identities = 660/678 (97%), Gaps = 4/678 (0%)
Strand = Plus / Minus
Query: 87 tggaaacatacttcttcctttgtacatcaataaaaaacccagcaagggaccttttccaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3886 tggaaacatacttcttcctttgtacatcaataaaaaacccagcaagggaccttttccaat 3827
Query: 147 caaatttgaattgcagtggaacagataccatacttcagtctgccctttgtaggcattgga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3826 caaatttgaattgcagtggaacagataccatacttcagtctgccctttgtaggcattgga 3767
Query: 207 ctaaatttttacttctgttattggtcgcaactaattttgttttatatttacttgacactt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3766 ctaaatttttacttctgttattggtcgcaactaattttgttttatatttacttgacactt 3707
Query: 267 atctttggtatgtgatctacaactcaatattctccctaaccagatccatctacatgggaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3706 atctttggtatgtgatctacaactcaatattctccctaaccagatccatctacatgggaa 3647
Query: 327 tgagtcacttaactccatggaaaaactgtttcgttagcttgacgaataagataaaactta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3646 tgagtcacttaactccatggaaaaactgtttcgttagcttgacgaataagataaaactta 3587
Query: 387 aaatattgccttctaatgaagaatggaacattagtattatttcagagttgtggaatgaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3586 aaatattgccttctaatgaagaatggaacattagtattatttcagagttgtggaatgaaa 3527
Query: 447 taatatactccatgtaccgagaaaatcttatatgcaaagagcatgtcgaaagattgattt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3526 taatatactccatgtaccgagaaaatcttatatgcaaagagcatgtcgaaagattgattt 3467
Query: 507 tccatctaacaaatgatgataacctcttaaaaccgtcacttcttttgtcaacagatgatc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3466 tccatctaacaaatgatgataacctcttaaaaccgtcacttcttttgtcaacagatgatc 3407
Query: 567 attttcttatgtcaaaggtatttaagaagtcaaaag-agtacgaagaagatt-acatttt 624
|||| ||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 3406 atttctttaggtcaagggtatttaagaagtcaaaagaagtacgaagaagattaacatttt 3347
Query: 625 ttgcacagtctttacattgcctttta-cagacgcagaatcgatcg-aaatatgcctacat 682
||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||
Sbjct: 3346 ttgcacagtctttacattgccctttaccagacgcagaatcgatcgaaaatatgcctacat 3287
Query: 683 tcttcggttttatcccacattacaaagagaaaattaagttaagtttaaaagaattcattc 742
||| || ||| ||||||||||||||||||||||| | ||||||||||||||| ||||
Sbjct: 3286 tctccgttttaatcccacattacaaagagaaaataatgttaagtttaaaagatatcatca 3227
Query: 743 aagcagaaactgacaatt 760
||||||||||||||||||
Sbjct: 3226 aagcagaaactgacaatt 3209
>3x_Contig34
Length = 700
Score = 159 bits (80), Expect = 1e-38
Identities = 246/300 (82%), Gaps = 1/300 (0%)
Strand = Plus / Minus
Query: 320 atgggaatgagtcacttaactccatggaaaaactgtttcgttagcttgacgaataagata 379
|||||||||||| | |||| | ||||||||| ||||| || || || | ||||||||||
Sbjct: 531 atgggaatgagtgagttaagtggatggaaaaagtgtttggtaaggttaaggaataagata 472
Query: 380 aaacttaaaatattgccttctaatgaagaatggaacattagtattatttcagagttgtgg 439
||| | ||||||||| || ||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 471 aaagtgaaaatattgggttgtaatgaagaatggaagattagtattatttgagagttgtgg 412
Query: 440 aatgaaataatatactccatgtaccgagaaaatcttatatgcaaagagcatgtcgaaaga 499
|||||||||||||| | || || |||||| | | ||||| |||||| |||| ||||||
Sbjct: 411 aatgaaataatatagtggatatagggagaaagtgtgatatggaaagaggatgtggaaaga 352
Query: 500 ttgattttccatctaacaaatgatgataacctcttaaaaccgtcacttcttttgtcaaca 559
|||||||| || | | |||||||||||| | |||||| || | || |||||| || |
Sbjct: 351 ttgattttggatgtgagaaatgatgataaggtgttaaaagggtgagttgttttgtgaaga 292
Query: 560 gatgatcattttcttatgtcaaaggtatttaagaagtcaaaag-agtacgaagaagatta 618
|||||| |||| ||| || || |||||||||||||| ||||| |||| |||||||||||
Sbjct: 291 gatgatgatttgtttaggtgaagggtatttaagaagtgaaaagaagtaggaagaagatta 232
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8117
Number of Sequences: 1807
Number of extensions: 8117
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 2
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)