BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA10RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1787 1092 0.0
>3x_Contig1787
Length = 34189
Score = 1092 bits (551), Expect = 0.0
Identities = 664/695 (95%), Gaps = 5/695 (0%)
Strand = Plus / Minus
Query: 44 cttgccttcgagcttcttgactttggcaacctttctcacggctttcattagatcttcctg 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 25294 cttgccttcgagcttcttgacttcggcaacctttctcacggctttcattagatcttcctg 25235
Query: 104 gtttatataatcgcggtcgtccctgatagcgaagaaccctgcttcagttatacagttacg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25234 gtttatataatcgcggtcgtccctgatagcgaagaaccctgcttcagttatacagttacg 25175
Query: 164 gatatccgcaccgttaaatccatcactcatcttgactgcagcttcaaagtcaaattctcc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25174 gatatccgcaccgttaaatccatcactcatcttgactgcagcttcaaagtcaaattctcc 25115
Query: 224 agctttttttacattggatgtatgaatcttgaagatttctaatcttcctgcctcatttgg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25114 agctttttttacattggatgtatgaatcttgaagatttctaatcttcctgcctcatttgg 25055
Query: 284 taaactgatttcgatttttctgtccaatctaccaggtcttagtaaagcaggatctaaagt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25054 taaactgatttcgatttttctgtccaatctaccaggtcttagtaaagcaggatctaaagt 24995
Query: 344 gtcaggtctattcgtagccataataactttcgtttgtcctaagttgtcgaaaccatccat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24994 gtcaggtctattcgtagccataataactttcgtttgtcctaagttgtcgaaaccatccat 24935
Query: 404 ctgagttaatagttccatcaatgtacgttgaatttcacgatctgctgaggtaccttcgct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24934 ctgagttaatagttccatcaatgtacgttgaatttcacgatctgctgaggtaccttcgct 24875
Query: 464 aaatctacgtccaccgatagcatctatttcgtccataaagatgatacaaagttcatgttt 523
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 24874 aaatctacgtccaccgatagcatctatttcgtccataaagatgatacaaggttcatg-tt 24816
Query: 524 ctttgcgttatgc-aacatttctctaatgatacgtgctgattcaccgatgtatttatcta 582
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24815 ctttggcgtatgcaaacatttctctaatgatacgtgctgattcaccgatgtatttatcta 24756
Query: 583 caatacc-gatgctgggggagagattaagttggcaccgatagttgcagcaactgccttta 641
||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 24755 caataccggatgctggggagaagataaagttggcaccgatagttgcagcaactgccttag 24696
Query: 642 ccaattaaagctttaccagtcccaggagacccattttgttaccaacccttaagggggttg 701
|||| ||||| |||||||| ||||||| |||| | || || ||||||| | || |||
Sbjct: 24695 ccaa-taaagtcttaccagtaccaggaggaccatatagtaacacacccttaggtggtttg 24637
Query: 702 aatcccacttctcttgaaaatttctgggttcttta 736
| |||||| ||||| ||||||||||||||||||||
Sbjct: 24636 attcccac-tctctcgaaaatttctgggttcttta 24603
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6238
Number of Sequences: 1807
Number of extensions: 6238
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)