BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZA11FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1280 1199 0.0
>3x_Contig1280
Length = 5058
Score = 1199 bits (605), Expect = 0.0
Identities = 687/701 (98%), Gaps = 10/701 (1%)
Strand = Plus / Minus
Query: 86 ccaccgcttcacttaaaaatttcgatggatgtagtgtcacaatacgtttcaatgtgctac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1722 ccaccgcttcacttaaaaatttcgatggatgtagtgtcacaatacgtttcaatgtgctac 1663
Query: 146 ccatcaactcaataatcgagtaaaatctcaattcagtgatgacttcctgaggtaatctgc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1662 ccatcaactcaataatcgagtaaaatctcaattcagtgatgacttcctgaggtaatctgc 1603
Query: 206 cgtaaaaggcatatccttctttcaaatcaggaatagattcattagcagatttaggtgttg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1602 cgtaaaaggcatatccttctttcaaatcaggaatagattcattagcagatttaggtgttg 1543
Query: 266 gcgaatccttgacagcattcttctcttcctcttcttcagttttatcactagaaccctcat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1542 gcgaatccttgacagcattcttctcttcctcttcttcagttttatcactagaaccctcat 1483
Query: 326 cctctgtgtaagtttcatcaccggaatcctcattctcaggatccataactggttcttcct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1482 cctctgtgtaagtttcatcaccggaatcctcattctcaggatccataactggttcttcct 1423
Query: 386 ccacaatgaacctcactagtgactcatcattaatccgtaggctgctcattagctcacatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1422 ccacaatgaacctcactagtgactcatcattaatccgtaggctgctcattagctcacatc 1363
Query: 446 cagcaaagaaacactcttttgggttaccgaacaatgctacttcattaaaacatttcatga 505
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1362 cagaaaagaaacactcttttgggttaccgaacaatgctacttcattaaaacatttcatga 1303
Query: 506 tcacagtcaaaaacttcttggaacgatcagcaccaaggtgattattattgccccaatgaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1302 tcacagtcaaaaacttcttggaacgatcagcaccaaggtgattattattgccccaatgaa 1243
Query: 566 tgaatttgatcaaaattgtgggcaaatcccacccaatttcatacactacatctttattct 625
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1242 tgaatttgatcaaaattttgggcaaatcccacccaatttcatacactacatctttattct 1183
Query: 626 gttgtaaaagggataggacttcactcaaatattcataccttttgttctaaaccttccctt 685
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 1182 gttgtaaaagggataggacttcactcaaatattcata-cttttgttctaaa-cttccctt 1125
Query: 686 gaaagttcacttcttcagaataaaagtcccaagatagtaacaaagggtggattatattca 745
| |||||||||||||||||||||| || ||||||||||||| |||||| ||||||| |||
Sbjct: 1124 g-aagttcacttcttcagaataaaggt-ccaagatagtaac-aagggt-gattata-tca 1070
Query: 746 ctcttctcttttcacaaaagctggtgagtaaacttttcctc 786
|||||||| || |||||||||| |||||| |||||||||||
Sbjct: 1069 ctcttctc-ttccacaaaagct-gtgagt-aacttttcctc 1032
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7467
Number of Sequences: 1807
Number of extensions: 7467
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)