BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC32ZA11RM1.SCF screened BAC_end
         (929 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1392                                                        1170   0.0  

>3x_Contig1392 
          Length = 9092

 Score = 1170 bits (590), Expect = 0.0
 Identities = 621/629 (98%), Gaps = 2/629 (0%)
 Strand = Plus / Minus

                                                                        
Query: 50   atcctgtgttcagtttctccactatttcattcgataaaggagagtatagccatatttccc 109
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5552 atcctgtgttcagtttcgccactatttcattcgataaaggagagtatagccatatttccc 5493

                                                                        
Query: 110  ctaggtttagacccagaactaccaatggtgtgtcattgtaagtaatccattgtatgcatg 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5492 ctaggtttagacccagaactaccaatggtgtgtcattgtaagtaatccattgtatgcatg 5433

                                                                        
Query: 170  tacagcagacgtctttcccctccaaatagagaaaattatcgttcactattccagatttgg 229
            ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 5432 tacagcagacgtctttcccctccaaatagagaaaattatcgttcactaaaccagatttgg 5373

                                                                        
Query: 230  aggcagttgttggctccactgatacccgctgtttatccaaagcggtggaaacgtatgcaa 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5372 aggcagttgttggctccactgatacccgctgtttatccaaagcggtggaaacgtatgcaa 5313

                                                                        
Query: 290  aatattgtccggttggatcatattgtgataatacgactggcgaagctgttgccatcgtta 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5312 aatattgtccggttggatcatattgtgataatacgactggcgaagctgttgccatcgtta 5253

                                                                        
Query: 350  agcttgctattgttattcgtgtggtagagtgtagacctctagcttaaacagtacgaaagc 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5252 agcttgctattgttattcgtgtggtagagtgtagacctctagcttaaacagtacgaaagc 5193

                                                                        
Query: 410  cggtgattgttcaattaatatcccaagacgttttatcgaaacactttaggaaagaagtaa 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5192 cggtgattgttcaattaatatcccaagacgttttatcgaaacactttaggaaagaagtaa 5133

                                                                        
Query: 470  gtacacaaaagtaaatactgtgcgatgagctcagatgagatgcgatgagatgagctatga 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5132 gtacacaaaagtaaatactgtgcgatgagctcagatgagatgcgatgagatgagctatga 5073

                                                                        
Query: 530  aaagtttcaaatgaaaagctttagcttggaaaggagaaagaaaagtgagattttacttac 589
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5072 aaagtttcaaatgaaaagctttagcttggaaaggagaaagaaaagtgaga-tttacttac 5014

                                                                        
Query: 590  -aaaaacaagtgccnggtaataagaagttagcatatattgttcacgtgatttggagcata 648
             ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5013 aaaaaacaagtgccgggtaataagaagttagcatatattgttcacgtgatttggagcata 4954

                                         
Query: 649  tagccagtggtccccaattttaagctttt 677
            |||||||||||||||||||| | ||||||
Sbjct: 4953 tagccagtggtccccaatttaaggctttt 4925


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7327
Number of Sequences: 1807
Number of extensions: 7327
Number of successful extensions: 227
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)